; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0003901 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003901
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationchr04:27663539..27663837
RNA-Seq ExpressionIVF0003901
SyntenyIVF0003901
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441641.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]5.24e-3491.8Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

XP_008449943.2 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]1.15e-3283.61Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

XP_011652893.2 exopolygalacturonase [Cucumis sativus]1.00e-3495.08Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL STTNGVRIKTWPDSVGTFP TDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

XP_022136075.1 exopolygalacturonase-like [Momordica charantia]3.47e-3186.89Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL STTNGVRIKTWPDS G F  +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

XP_038895545.1 exopolygalacturonase-like [Benincasa hispida]5.97e-3288.52Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL +T+NGVRIKTWPDSVG FP  DMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

TrEMBL top hitse value%identityAlignment
A0A0A0LX75 Uncharacterized protein1.2e-2593.22Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK
        +KKCKL STTNGVRIKTWPDSVGTFP TDMHFEDIEM NVSNPIIIDQEYCPWNQCNRK
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK

A0A1S3B3X5 exopolygalacturonase-like3.9e-2791.8Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

A0A5A7TRZ0 Exopolygalacturonase-like1.4e-2485.25Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

A0A5A7ULW5 Exopolygalacturonase-like3.9e-2791.8Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

A0A6J1C2U8 exopolygalacturonase-like6.2e-2586.89Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +KKCKL STTNGVRIKTWPDS G F  +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRKVP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

SwissProt top hitse value%identityAlignment
P35337 Polygalacturonase1.0e-1659.02Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +K C L  T+NG+RIKTWP +  T     +HFEDI +  VSNPI+IDQEYCPWNQCN+  P
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

Q39766 Polygalacturonase1.4e-1353.45Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR
        +  C + +T+NG RIKTWP   G    +++HFEDI M NVS+PI+IDQ+YCPWN+C +
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR

Q39786 Polygalacturonase1.4e-1353.45Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR
        +  C + +T+NG RIKTWP   G    +++HFEDI M NVS+PI+IDQ+YCPWN+C +
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR

Q40312 Polygalacturonase1.3e-1965.57Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +K C L +T NGVRIKTWPD+ GT   +D+HFEDI M NV NP+IIDQEY PWNQC++K P
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

W8P8Q3 Probable galacturan 1,4-alpha-galacturonidase SALK61.1e-1354.1Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +K C    T NGVRIK+W +S      +D+HFEDI + NV NP+IIDQEYCP+N C  K P
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein3.6e-1760.71Show/hide
Query:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK
        C L  T NG+RIKTWP +  +   +D+HFEDI + +VSNPI+IDQEYCPWNQCN++
Subjt:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK

AT3G07830.1 Pectin lyase-like superfamily protein1.8e-1658.93Show/hide
Query:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK
        C L  T NG+RIKTWP +  +   +++HFE+I + NVSNPI+IDQEYCPWNQCN++
Subjt:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK

AT3G07840.1 Pectin lyase-like superfamily protein1.0e-1658.62Show/hide
Query:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        C L  T NG+RIKTWP +      + +HFE+I + NVSNPI+IDQEYCPWNQCN++ P
Subjt:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

AT4G18180.1 Pectin lyase-like superfamily protein1.2e-1557.38Show/hide
Query:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        +K CK++ TTNG+RIKTW +S G    T+M FE+I M NV+NPIIIDQ YCP++ C   VP
Subjt:  MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP

AT5G48140.1 Pectin lyase-like superfamily protein3.3e-1862.07Show/hide
Query:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP
        C L  T NG+RIKTWP +  T   +D+HFE+I + NVSNPI+IDQEYCPWNQCN++ P
Subjt:  CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAAT
GGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAAT
GGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAA
Protein sequenceShow/hide protein sequence
MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVP