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IVF0003990 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003990
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAlba domain-containing protein
Genome locationchr05:24733042..24734477
RNA-Seq ExpressionIVF0003990
SyntenyIVF0003990
Gene Ontology termsGO:0048235 - pollen sperm cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139384.1 uncharacterized protein At2g34160 [Cucumis sativus]6.96e-8398.58Show/hide
Query:  ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
Subjt:  ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
        LGKSEKFDSLMTAATAVPETVVAVAAA EEEKKAEE+KEEQ
Subjt:  LGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ

XP_008456222.1 PREDICTED: uncharacterized protein At2g34160 [Cucumis melo]2.45e-85100Show/hide
Query:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
        VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
Subjt:  VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ

XP_022946134.1 uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata]6.23e-7182.91Show/hide
Query:  MATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAA-------GEEEKKAEENKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA A A         EEKK EE+KEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAA-------GEEEKKAEENKEEQ

XP_022999100.1 uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima]2.99e-7080.37Show/hide
Query:  MATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAA------------AGEEEKKAEENKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA  A            A  EEKK EE+KEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAA------------AGEEEKKAEENKEEQ

XP_038877259.1 uncharacterized protein At2g34160-like [Benincasa hispida]2.91e-7593.71Show/hide
Query:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGA  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPETVVAVA---AAGEEEKKAEENKE
        VLGKSEKFDSLMTAATAVPE V  VA   AA EEEKKAEENKE
Subjt:  VLGKSEKFDSLMTAATAVPETVVAVA---AAGEEEKKAEENKE

TrEMBL top hitse value%identityAlignment
A0A0A0LG69 Alba domain-containing protein7.8e-6398.58Show/hide
Query:  ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
        ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV
Subjt:  ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIV

Query:  LGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
        LGKSEKFDSLMTAATAVPETVVAVAAA EEEKKAEE+KEEQ
Subjt:  LGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ

A0A1S3C2U1 uncharacterized protein At2g341608.4e-65100Show/hide
Query:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
        VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
Subjt:  VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ

A0A5D3D4G4 Alba DNA/RNA-binding protein8.4e-65100Show/hide
Query:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
        MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI
Subjt:  MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEI

Query:  VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
        VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ
Subjt:  VLGKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEEQ

A0A6J1G2Y0 uncharacterized protein At2g34160-like isoform X15.1e-5482.91Show/hide
Query:  MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT          ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAA-------GEEEKKAEENKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA A A         EEKK EE+KEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAA-------GEEEKKAEENKEEQ

A0A6J1KEC8 uncharacterized protein At2g34160 isoform X11.5e-5380.37Show/hide
Query:  MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
        MAT+AVSGAT          ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR
Subjt:  MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR

Query:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAA------------AGEEEKKAEENKEEQ
        LVQKAKIEIVLGKSEKFDSLMTAAT VPE  VA  A            A  EEKK EE+KEEQ
Subjt:  LVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAA------------AGEEEKKAEENKEEQ

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.1e-3770.49Show/hide
Query:  TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVL
        T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L
Subjt:  TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVL

Query:  GKSEKFDSLMTAATAVPETVVA
         KSEKFD LM AA    E   A
Subjt:  GKSEKFDSLMTAATAVPETVVA

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein1.7e-3864.75Show/hide
Query:  TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVL
        T  V+    A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L
Subjt:  TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVL

Query:  GKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEE
         KSEKFD LM              AA  EEK+A E +E+
Subjt:  GKSEKFDSLMTAATAVPETVVAVAAAGEEEKKAEENKEE

AT2G34160.1 Alba DNA/RNA-binding protein7.8e-3970.49Show/hide
Query:  TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVL
        T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L
Subjt:  TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVL

Query:  GKSEKFDSLMTAATAVPETVVA
         KSEKFD LM AA    E   A
Subjt:  GKSEKFDSLMTAATAVPETVVA

AT3G04620.1 Alba DNA/RNA-binding protein4.7e-4473.91Show/hide
Query:  AVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGK
        A +  T   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGK
Subjt:  AVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGK

Query:  SEKFDSLMTAAT--AVPETVVAVAAAGEEEKKAEENKE
        S+KFDSL+   T    PE      A+ E E   E  +E
Subjt:  SEKFDSLMTAAT--AVPETVVAVAAAGEEEKKAEENKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGATTGCAGTATCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGC
TAAGAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAG
AAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCT
CTGATGACTGCGGCCACAGCAGTACCGGAGACAGTGGTGGCCGTTGCGGCAGCTGGCGAGGAGGAGAAAAAAGCAGAGGAAAACAAGGAGGAGCAGTAG
mRNA sequenceShow/hide mRNA sequence
CCGAAGCCCTTCAATCGCCCTCTCCCCTTCCATTTTTCCCGCTCCTTCCAATTTTCCCCCATACTATTTCTCAACAAACCCAAAATTCTTCTCTCTGATTTCCTTCCATC
TGCTTACCGGAAAATACAGAGATTTTTGTTTTACTCAGTGAGAAAGTGAAAAGTTTTAGCAATGGCGACGATTGCAGTATCGGGAGCCACACCCGCCACTGAAACACAAA
AGAAGAACAGAATTCAGGTTTCTAATACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGA
ATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGG
TCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACAGCAGTACCGGAGACAGTGGTGGCCGTTGCGG
CAGCTGGCGAGGAGGAGAAAAAAGCAGAGGAAAACAAGGAGGAGCAGTAGGGGGAAATTAAAGAGAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATT
TGCAATATCATAGGATAGGCTATTTTCATTTGAAATTCCTCTACTAGTTTTTCTTTGCATCTTTCTGGACAGTCACAGTTATGAATGAGATGTCATGCCATCAACC
Protein sequenceShow/hide protein sequence
MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDS
LMTAATAVPETVVAVAAAGEEEKKAEENKEEQ