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IVF0003994 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0003994
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:17827158..17827325
RNA-Seq ExpressionIVF0003994
SyntenyIVF0003994
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047704.1 retrotransposon protein [Cucumis melo var. makuwa]4.48e-33100Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
KAA0054051.1 retrotransposon protein [Cucumis melo var. makuwa]4.78e-2585.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDD+ DVDEGDSAYATTT SEDIH IETTNEWSQW DEL E MFTDWQL NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
KAA0059918.1 retrotransposon protein [Cucumis melo var. makuwa]2.80e-2481.82Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDV DVDEG+SAYATTTT+ED+H IET NEWSQW DEL + MFTDWQLCNA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
TYK19044.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.94e-2385.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
XP_016899482.1 PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo]1.47e-2385.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
TrEMBL top hitse value%identityAlignment
A0A1S4DU05 uncharacterized protein LOC1079905431.1e-1785.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
A0A5A7SNH9 Putative nuclease HARBI11.1e-1785.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
A0A5A7TXJ0 Retrotransposon protein1.6e-24100Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
A0A5D3BDZ0 Retrotransposon protein1.5e-1785.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDD+ DVDEGDSAYATTT SEDIH IETTNEWSQW DEL E MFTDWQL NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
A0A5D3D656 Putative nuclease HARBI11.1e-1785.45Show/hide
Query:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
        MTYCDDVYDVDEGDSAYATTT SEDIH IET NEWSQW DEL E MFTDW+L NA
Subjt:  MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGATGACGTTTACGACGTGGACGAGGGAGACTCTGCGTACGCGACAACCACCACTTCAGAAGACATTCACGACATTGAGACGACAAACGAGTGGTCTCA
GTGGTGTGACGAACTAACTGAATTGATGTTCACAGATTGGCAGTTGTGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGATGACGTTTACGACGTGGACGAGGGAGACTCTGCGTACGCGACAACCACCACTTCAGAAGACATTCACGACATTGAGACGACAAACGAGTGGTCTCA
GTGGTGTGACGAACTAACTGAATTGATGTTCACAGATTGGCAGTTGTGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTYCDDVYDVDEGDSAYATTTTSEDIHDIETTNEWSQWCDELTELMFTDWQLCNA