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IVF0004001 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004001
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr08:24123076..24123318
RNA-Seq ExpressionIVF0004001
SyntenyIVF0004001
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025503.1 putative Polyprotein [Cucumis melo var. makuwa]2.38e-1779.25Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVL
        MAG FQ DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPKVL
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVL

KAA0033399.1 hypothetical protein E6C27_scaffold111G00500 [Cucumis melo var. makuwa]5.96e-1773.08Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV
        MAG  Q DLMS +LN+ F FEGAHFKRWK KMLFFL LKKV   C+TEKPKV
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV

KAA0042338.1 putative Polyprotein [Cucumis melo var. makuwa]2.04e-1878.43Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPK
        MAG  Q DLMSS+LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPK
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPK

KAA0058200.1 uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]3.98e-1875.47Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVL
        MAG  Q DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKP+VL
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVL

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]8.55e-1876.92Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV
        MAG  Q DLMSS+LNR F FEGAHFKRWK K+LFFL LKKV  AC+TEKPKV
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV

TrEMBL top hitse value%identityAlignment
A0A5A7SLG1 Putative Polyprotein2.9e-1477.78Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLK
        MAG FQ DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPKVL+
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLK

A0A5A7THP6 Putative Polyprotein1.4e-1378.43Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPK
        MAG  Q DLMSS+LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKPK
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPK

A0A5A7USR3 Uncharacterized protein1.9e-1374.07Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLK
        MAG  Q DLMS +LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEKP+VL+
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLK

A0A5A7UYY4 Uncharacterized protein1.4e-1376.92Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV
        MAG  Q DLMSS+LNR F FEGAHFKRWK K+LFFL LKKV  AC+TEKPKV
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV

A0A5D3BEH3 Uncharacterized protein7.1e-1376.92Show/hide
Query:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV
        MAG  Q DLMSS+LNR F FEGAHFKRWK KMLFFL LKKV  AC+TEK KV
Subjt:  MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGACCTTTCCAAGGCGATTTGATGTCCTCTAACCTCAATCGTCATTTTTGCTTTGAAGGAGCACACTTTAAGAGATGGAAGCATAAGATGTTGTTCTTCCTCAA
CTTGAAGAAAGTTGTCGCCGCATGTTCCACTGAAAAACCAAAGGTTCTAAAAAACCAATCCAATAGAGGAGCAAATCGACAGTCTTACAGCGTGGATAGAGACGAACTTC
ATCTGCAAGAATTTAATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGACCTTTCCAAGGCGATTTGATGTCCTCTAACCTCAATCGTCATTTTTGCTTTGAAGGAGCACACTTTAAGAGATGGAAGCATAAGATGTTGTTCTTCCTCAA
CTTGAAGAAAGTTGTCGCCGCATGTTCCACTGAAAAACCAAAGGTTCTAAAAAACCAATCCAATAGAGGAGCAAATCGACAGTCTTACAGCGTGGATAGAGACGAACTTC
ATCTGCAAGAATTTAATTCTTAA
Protein sequenceShow/hide protein sequence
MAGPFQGDLMSSNLNRHFCFEGAHFKRWKHKMLFFLNLKKVVAACSTEKPKVLKNQSNRGANRQSYSVDRDELHLQEFNS