CuGenDBv2

Gene ID	IVF0004036
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr08:29319221..29322676
RNA-Seq Expression	IVF0004036
Synteny	IVF0004036
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADQ85918.1 reverse transcriptase, partial [Cucumis x hytivus]

4.63e-41

76.14

Show/hide

Query:  TALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        TA  HGELEEVIYMAQPKGYEVKGKEDMVCRLHKS+YGLKQS               PRQWYIRFDTFILKQ FH+NSYDACV+WKLS
Subjt:  TALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

ADQ85925.1 reverse transcriptase, partial [Cucumis x hytivus]

1.14e-41

77.27

Show/hide

Query:  TALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        TA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKS+YGLKQS               PRQWYIRFDTFILKQ FH+NSYDACV+WKLS
Subjt:  TALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.71e-40

79.35

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTTA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQS               PRQWYIRFDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

6.68e-40

79.35

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTTA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQS               PRQWYIRFDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.71e-40

79.35

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTTA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQS               PRQWYIRFDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.7e-32

77.17

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTT  LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQ               SPRQWYI FDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

A0A5A7UB25 Putative gag-pol polyprotein

1.9e-33

79.35

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTTA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQ               SPRQWYIRFDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

2.1e-32

78.26

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTT  LHGELEEVIYMAQPKGYEVKGKEDMV RLHKSLYGLKQ               SPRQWYIRFDTFILKQGFH+NSYDACV+WKLS
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

A0A5D3CTV2 Putative polyprotein

1.9e-33

79.35

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTTA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQ               SPRQWYIRFDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

A0A5D3DNU1 Putative gag-pol polyprotein

1.9e-33

79.35

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        MDVTTA LHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQ               SPRQWYIRFDTFILKQGFH+NSYDACV+WK S
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.5e-07

35.23

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVH
        MDV TA L+G L+E IYM  P+G  +    D VC+L+K++YGLKQ               + R W+  F+  + +  F  +S D C++
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-19

51.11

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWK
        +DV TA LHG+LEE IYM QP+G+EV GK+ MVC+L+KSLYGLKQ               +PRQWY++FD+F+  Q + K   D CV++K
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.0e-08

37.18

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGF
        +DV  A L G L + +YM+QP G+  K + + VC+L K+LYGLKQ               +PR WY+    ++L  GF
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.8e-10

39.74

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGF
        +DV  A L G L + +YM+QP G+  K + D VCRL K++YGLKQ               +PR WY+   T++L  GF
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGF

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.1e-08

31.25

Show/hide

Query:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDM----VCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS
        +D++ A L+G+L+E IYM  P GY  +  + +    VC L KS+YGLKQ               + RQW+++F   ++  GF ++  D     K++
Subjt:  MDVTTALLHGELEEVIYMAQPKGYEVKGKEDM----VCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGTCACCACAGCACTTCTTCATGGAGAACTAGAGGAAGTGATCTACATGGCTCAACCTAAGGGCTATGAGGTGAAGGGTAAGGAAGACATGGTTTGTCGTCTTCA
CAAGTCCCTCTATGGACTAAAACAATCACTACAAGAAAACGGAGGTTTCCCGACGCCAATAAAGACTGAATCTCCAAGACAGTGGTATATCAGGTTTGATACTTTCATTC
TAAAGCAGGGATTCCACAAAAACTCATATGATGCTTGTGTTCACTGGAAACTATCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDVTTALLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSLQENGGFPTPIKTESPRQWYIRFDTFILKQGFHKNSYDACVHWKLS

IVF0004036 (gene) of Melon (IVF77) v1 genome