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IVF0004044 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004044
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTryptophan synthase beta type 2
Genome locationchr06:9868078..9868548
RNA-Seq ExpressionIVF0004044
SyntenyIVF0004044
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8684684.1 Tryptophan synthase beta type 2 [Hibiscus syriacus]1.54e-1365.15Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VV+LK+K+ +SLK MK       DYDK+EKSESMRVEIRSRKA+KLI+++LK ADSP+SKT+ F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

KAF5961406.1 hypothetical protein HYC85_002615 [Camellia sinensis]1.21e-1363.64Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VVNLK+K+ +SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP S+TY F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

KAG7036740.1 hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyrosperma]2.87e-2084.38Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTY
        R+VVNLKAKIMKSLKM K  AT  D YDKMEKSESMRVEIRSRKAQKLIQQ++K ADSPSSKTY
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTY

KHG17548.1 Titin [Gossypium arboreum]9.11e-1462.86Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKAT----NYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VVNLK+K+ +SLKM K K T    +Y  YDKMEK+ESMR+EIRSRKA+KLIQ +LK ADSP ++T+ F
Subjt:  RVVVNLKAKIMKSLKMMKMKAT----NYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

RYQ78961.1 hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea]1.22e-1577.61Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP-SSKTYGF
        R+VVNLK+KI KSLKMMK KA++Y  YDKMEKSESMRVEIRSRKA+KLI+ +LK ADSP SSKTY F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP-SSKTYGF

TrEMBL top hitse value%identityAlignment
A0A0B0NSM2 Titin8.3e-1062.86Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKAT----NYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VVNLK+K ++SLKM K K T    +Y  YDKMEK+ESMR+EIRSRKA+KLIQ +LK ADSP ++T+ F
Subjt:  RVVVNLKAKIMKSLKMMKMKAT----NYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

A0A445DAW0 Uncharacterized protein2.6e-1174.63Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP-SSKTYGF
        R+VVNLK+KI KSLKMMK  ++ Y  YDKMEKSESMRVEIRSRKA+KLI+ +LK ADSP SSKTY F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP-SSKTYGF

A0A4S4DW15 RNase H domain-containing protein1.1e-0963.64Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VVNLK+K ++SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP S+TY F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

A0A6A2YYL4 Tryptophan synthase beta type 21.9e-0965.15Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VV+LK+K ++SLK MK       DYDK+EKSESMRVEIRSRKA+KLI+++LK ADSP+SKT+ F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

A0A7J7IA61 Uncharacterized protein1.1e-0963.64Show/hide
Query:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
        R+VVNLK+K ++SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP S+TY F
Subjt:  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCGTTGAAGATGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGA
AAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCTTCTAAAACTTATGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
TCTCTCTCTCTCTCTCTCTCTCTTCCTTCTTTTGCCAATTTTTGTTGTGAAATTTTGCAGGTTTAGGTTATTGTGTGAAGGGAAAAAGCGGATAATGGTATTGAGGGTAG
TAGTGAATTTGAAAGCAAAAATAATGAAGTCGTTGAAGATGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAA
ATCAGAAGCAGAAAAGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCTTCTAAAACTTATGGTTTTTGATTTTTTTTATATAAATATTAGTTTTT
TCTCTTATATCATTCTACCCCTCATATCTACCCCTTCCCTCCCTTCATCACTATATAATTATATATGAACAAAAGTATAAGATAAAATAACTAAGTCTCTTTCTTTATTC
TCTCTTCTTCTTCTTATTTTCTTTTCCTCCT
Protein sequenceShow/hide protein sequence
MVLRVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF