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IVF0004089 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004089
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr11:21783658..21783825
RNA-Seq ExpressionIVF0004089
SyntenyIVF0004089
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038851.1 retrotransposon protein [Cucumis melo var. makuwa]2.97e-2889.09Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDDV DEDEGDSTYATT ASEDIQY ETTNEWSQWRDDLA SMFT+WQ RNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
KAA0054567.1 retrotransposon protein [Cucumis melo var. makuwa]3.54e-30100Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
KAA0058871.1 retrotransposon protein [Cucumis melo var. makuwa]1.52e-2890.91Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYC+DV+DEDEGDSTY TT ASEDIQY ETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]1.31e-2992.73Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDD++DEDEGDSTYATT ASEDIQY ETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
TYK04228.1 retrotransposon protein [Cucumis melo var. makuwa]1.47e-2889.09Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCD+V+D+DEGDSTYATT ASEDIQY ETTNEWSQWRDDLAESMFTEWQLRN 
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
TrEMBL top hitse value%identityAlignment
A0A5A7TUU4 Retrotransposon protein1.4e-2092.73Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDDV DEDEGDSTYATT ASEDIQY ETTNEWSQWRDDLAESMFT+WQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7UG16 Retrotransposon protein6.4e-2194.55Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDDV DEDEGDSTYATT ASEDIQY ETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7UJ20 Retrotransposon protein3.1e-23100Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7V4C6 Retrotransposon protein1.4e-2092.73Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDDV D+DEGDSTYATT ASEDIQY ETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
A0A5A7V4Q8 Retrotransposon protein6.4e-2192.73Show/hide
Query:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
        MTYCDD++DEDEGDSTYATT ASEDIQY ETTNEWSQWRDDLAESMFTEWQLRNA
Subjt:  MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGACGACGTTAACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTCAGTACAATGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGACGACGTTAACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCATCGCTTCAGAAGACATTCAGTACAATGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAA
Protein sequenceShow/hide protein sequence
MTYCDDVNDEDEGDSTYATTIASEDIQYNETTNEWSQWRDDLAESMFTEWQLRNA