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IVF0004120 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004120
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr10:24248144..24248647
RNA-Seq ExpressionIVF0004120
SyntenyIVF0004120
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032633.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.33e-3850.3Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKET--SSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI
        ME INV +DDH +TSK + +EED LFW   SQ  R T  ++SSL +    SS   + D +     A  V H +  +SE S    QQT E  +Q     L 
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKET--SSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI

Query:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
        ++  SS+QKLMP  H+AKNHP N+IIGDV+SG+TTRKK+ R Y KMVANVCYTST+E   +T ALTD+H
Subjt:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH

KAA0035372.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.25e-3648.52Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLT--KETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI
        ME +NV +DDH + +   +DEEDG  W   SQ T+ +  E SSLT  K+ SS   + +++ VL   T V HL +S+SE S+ + QQT ++S +     L 
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLT--KETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI

Query:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
        ++  SSMQK++  TH+AKNHP ++IIGDV S ITT+KK+++ Y KMVANVCYTST+E  T+T ALTD+H
Subjt:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH

KAA0049939.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.08e-4659.04Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
        ME INV +DD+ QT+KS +DEEDG FW +KSQA R T              R+S   V+          LE S SECSI DYQQT  HSSQND  D+ NS
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS

Query:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDD
        T+SSMQ LM ST+VAKNHP NAIIGD RS ITT+KK+Q  Y KMVANVC+TSTME  T+TDAL DD
Subjt:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDD

KAA0054113.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.90e-4665.35Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
        ME INV +DDH + S S  DEEDGLFWV KSQ T+P++   SSL +++SS R S+D+V +    T   HLE SSSECSIFDYQQT EHSSQND+ D+ NS
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS

Query:  TKSSMQKLMPSTHVAKNHPLNAIIGDV
        T+SSMQKL+PSTH+AKNHP NAIIGDV
Subjt:  TKSSMQKLMPSTHVAKNHPLNAIIGDV

KAA0065472.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.43e-113100Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
        MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS

Query:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
        TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
Subjt:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH

TrEMBL top hitse value%identityAlignment
A0A5A7SQH0 Putative mitochondrial protein3.0e-2950.3Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKE--TSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI
        ME INV +DDH +TSK + +EED LFW   SQ  R T  ++SSL +    SS   + D +     A  V H +  +SE S    QQT E  +Q     L 
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKE--TSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI

Query:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
        ++  SS+QKLMP  H+AKNHP N+IIGDV+SG+TTRKK+ R Y KMVANVCYTST+E   +T ALTD+H
Subjt:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH

A0A5A7SVT6 Gag-pol polyprotein2.1e-3048.52Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLT--KETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI
        ME +NV +DDH + +   +DEEDG  W   SQ T+ +  E SSLT  K+ SS   + +++ VL   T V HL +S+SE S+ + QQT ++S +     L 
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLT--KETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLI

Query:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
        ++  SSMQK++  TH+AKNHP ++IIGDV S ITT+KK+++ Y KMVANVCYTST+E  T+T ALTD+H
Subjt:  NSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH

A0A5A7UDN6 Gag-pol polyprotein5.6e-3665.35Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
        ME INV +DDH + S S  DEEDGLFWV KSQ T+P++   SSL +++SS R S+D+V +    T   HLE SSSECSIFDYQQT EHSSQND+ D+ NS
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS

Query:  TKSSMQKLMPSTHVAKNHPLNAIIGDV
        T+SSMQKL+PSTH+AKNHP NAIIGDV
Subjt:  TKSSMQKLMPSTHVAKNHPLNAIIGDV

A0A5A7VAZ1 Putative mitochondrial protein2.0e-86100Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
        MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS

Query:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
        TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH
Subjt:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH

A0A5D3C707 Gag-pol polyprotein3.0e-3759.04Show/hide
Query:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS
        ME INV +DD+ QT+KS +DEEDG FW +KSQA R T              R+S   V+          LE S SECSI DYQQT  HSSQND  D+ NS
Subjt:  MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINS

Query:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDD
        T+SSMQ LM ST+VAKNHP NAIIGD RS ITT+KK+Q  Y KMVANVC+TSTME  T+TDAL DD
Subjt:  TKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCATCAATGTTAATATGGATGATCACATCCAAACTTCCAAGAGTCATGTAGATGAAGAAGATGGACTTTTCTGGGTCAACAAGTCTCAAGCTACTAGACCTAC
TATCTTTGAAAATTCATCCTTAACTAAAGAAACTTCGTCTATTCGGATCAGTAAGGACAACGTATTAGTTCTAGCAGCAGCCACCCCAGTTGGTCATCTTGAGAACAGCT
CAAGCGAATGTTCAATATTTGATTATCAACAGACATTAGAGCATTCCTCTCAGAATGATCATCAAGATCTCATCAACTCTACTAAGTCCTCTATGCAAAAATTGATGCCC
TCCACTCATGTAGCTAAGAATCATCCTCTTAATGCTATTATTGGGGATGTCAGAAGTGGCATTACCACGAGAAAGAAGAAACAAAGATGCTATGTGAAAATGGTTGCAAA
TGTGTGCTATACCTCCACCATGGAACTTGCTACTATCACTGATGCTCTCACAGATGATCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCATCAATGTTAATATGGATGATCACATCCAAACTTCCAAGAGTCATGTAGATGAAGAAGATGGACTTTTCTGGGTCAACAAGTCTCAAGCTACTAGACCTAC
TATCTTTGAAAATTCATCCTTAACTAAAGAAACTTCGTCTATTCGGATCAGTAAGGACAACGTATTAGTTCTAGCAGCAGCCACCCCAGTTGGTCATCTTGAGAACAGCT
CAAGCGAATGTTCAATATTTGATTATCAACAGACATTAGAGCATTCCTCTCAGAATGATCATCAAGATCTCATCAACTCTACTAAGTCCTCTATGCAAAAATTGATGCCC
TCCACTCATGTAGCTAAGAATCATCCTCTTAATGCTATTATTGGGGATGTCAGAAGTGGCATTACCACGAGAAAGAAGAAACAAAGATGCTATGTGAAAATGGTTGCAAA
TGTGTGCTATACCTCCACCATGGAACTTGCTACTATCACTGATGCTCTCACAGATGATCATTGA
Protein sequenceShow/hide protein sequence
MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMP
STHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH