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IVF0004232 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004232
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:17105796..17106113
RNA-Seq ExpressionIVF0004232
SyntenyIVF0004232
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036004.1 uncharacterized protein E6C27_scaffold56G002210 [Cucumis melo var. makuwa]2.83e-3170Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL
        MLK  S+L DDFRATIE I AEMA MKM        +KILEP  FNGN   KELENFIFD+EQYFK +GTNSEETKVTL S++LSDDAKL
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL

KAA0048463.1 uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa]2.72e-3265.62Show/hide
Query:  DDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL
        D+FRATIE I+AEMA+MK+ VNL M+ V               KI +P  FNGNRDVKELENFIFD+EQYFK SGTNS+ETKVTL S+HLSDDAKL
Subjt:  DDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL

KAA0067610.1 uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa]6.61e-3969.52Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQT---------------VKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS
        MLKF +DLSDDF ATIEKIEAEMA MKMQVNLTM+                +KI EP  FNGNRDVKELE FIFD++QYFK SGT+SEETKVTL S+HLS
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQT---------------VKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS

Query:  DDAKL
        DDAKL
Subjt:  DDAKL

TYK03491.1 uncharacterized protein E5676_scaffold121G001100 [Cucumis melo var. makuwa]4.79e-3059.05Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS
        MLK  SDLSDDFRATIE I+ +M ++K+QV LTM+ +               KI EP  F+ NRD KELENFI DI+QYFK SG NSEETKVTL  ++LS
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS

Query:  DDAKL
        DDAKL
Subjt:  DDAKL

WP_217833205.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.09e-3361.9Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS
        MLK  +DL+DDFRAT+E I AEM +MK QVNLTM+ V               KI EP  F+GNRD K+LENFIFD++QYFK SGT SEE KVTL S+HLS
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS

Query:  DDAKL
        DDAKL
Subjt:  DDAKL

TrEMBL top hitse value%identityAlignment
A0A5A7VKA0 Uncharacterized protein1.2e-2769.52Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQT---------------VKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS
        MLKF +DLSDDF ATIEKIEAEMA MKMQVNLTM+                +KI EP  FNGNRDVKELE FIFD++QYFK SGT+SEETKVTL S+HLS
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQT---------------VKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS

Query:  DDAKL
        DDAKL
Subjt:  DDAKL

A0A5D3BUS6 Uncharacterized protein4.7e-2159.05Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQT---------------VKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS
        MLK  SDLSDDFRATIE I+ +M ++K+QV LTM+                +KI EP  F+ NRD KELENFI DI+QYFK SG NSEETKVTL  ++LS
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQT---------------VKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLS

Query:  DDAKL
        DDAKL
Subjt:  DDAKL

A0A5D3D6V5 Retrotrans_gag domain-containing protein5.5e-2266.67Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL
        MLK  SDL DDF+ATI+ I+ EM ++KM        +KILEP  FNGNRD KELE FI ++EQYFK SGTNSEETKVTL S+HLSDDAKL
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL

A0A5D3DYE0 Uncharacterized protein1.5e-2265.62Show/hide
Query:  DDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL
        D+FRATIE I+AEMA+MK+ VNL M+ V               KI +P  FNGNRDVKELENFIFD+EQYFK SGTNS+ETKVTL S+HLSDDAKL
Subjt:  DDFRATIEKIEAEMADMKMQVNLTMQTV---------------KILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL

A0A5D3E2R0 Uncharacterized protein9.5e-2270Show/hide
Query:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL
        MLK  S+L DDFRATIE I AEMA MKM        +KILEP  FNGN   KELENFIFD+EQYFK +GTNSEETKVTL S++LSDDAKL
Subjt:  MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAAGTTTCATAGTGACCTATCAGACGATTTTAGAGCAACGATCGAGAAAATCGAGGCCGAAATGGCCGATATGAAAATGCAAGTAAATTTAACGATGCAAACAGT
CAAGATCTTGGAACCCATAGTCTTCAATGGGAATCGCGATGTTAAAGAACTTGAAAATTTCATCTTTGATATAGAGCAATACTTTAAGGTTAGTGGAACCAATTCTGAAG
AAACCAAGGTAACATTAGTCTCCATACATCTGTCCGATGATGCAAAACTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAAGTTTCATAGTGACCTATCAGACGATTTTAGAGCAACGATCGAGAAAATCGAGGCCGAAATGGCCGATATGAAAATGCAAGTAAATTTAACGATGCAAACAGT
CAAGATCTTGGAACCCATAGTCTTCAATGGGAATCGCGATGTTAAAGAACTTGAAAATTTCATCTTTGATATAGAGCAATACTTTAAGGTTAGTGGAACCAATTCTGAAG
AAACCAAGGTAACATTAGTCTCCATACATCTGTCCGATGATGCAAAACTCTGA
Protein sequenceShow/hide protein sequence
MLKFHSDLSDDFRATIEKIEAEMADMKMQVNLTMQTVKILEPIVFNGNRDVKELENFIFDIEQYFKVSGTNSEETKVTLVSIHLSDDAKL