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IVF0004234 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004234
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr11:8186216..8186644
RNA-Seq ExpressionIVF0004234
SyntenyIVF0004234
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035634.1 retrotransposon protein [Cucumis melo var. makuwa]1.08e-1979.66Show/hide
Query:  AKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        A+TFADIDLNVPADNDSVP EDGIDMEF AM S RMN+S + MMG RS +SSDGRTGSS
Subjt:  AKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]6.37e-1970.15Show/hide
Query:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        KD+ATG  A+TFADID N+ A  DSVP +DGIDMEF  M S RMN+S + MMGGRSG+SSDGRTGSS
Subjt:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

KAA0066443.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.12e-2789.71Show/hide
Query:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        RKDRATGTRAKTFADID NV  DNDSVPVEDGIDMEFLAMSS RMNLS EGMMG RSGQ SDGRTGSS
Subjt:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

TYJ98397.1 retrotransposon protein [Cucumis melo var. makuwa]1.11e-31100Show/hide
Query:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD
        RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD
Subjt:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]2.59e-1669.84Show/hide
Query:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGR
        KDRATG  A+TFADID NV  DNDSVP EDGI+MEF AM   RMN+S + MM GRS QSSD R
Subjt:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGR

TrEMBL top hitse value%identityAlignment
A0A5A7SWD7 Retrotransposon protein3.3e-1479.66Show/hide
Query:  AKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        A+TFADIDLNVPADNDSVP EDGIDMEF AM S RMN+S + MMG RS +SSDGRTGSS
Subjt:  AKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

A0A5A7TYU4 Retrotransposon protein5.6e-1470.15Show/hide
Query:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        KD+ATG  A+TFADID N+ A  DSVP +DGIDMEF  M S RMN+S + MMGGRSG+SSDGRTGSS
Subjt:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

A0A5A7VE95 Putative nuclease HARBI12.8e-2189.71Show/hide
Query:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        RKDRATGTRAKTFADID NV  DNDSVPVEDGIDMEFLAMSS RMNLS EGMMG RSGQ SDGRTGSS
Subjt:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

A0A5D3BGZ9 Retrotransposon protein1.7e-23100Show/hide
Query:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD
        RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD
Subjt:  RKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD

A0A5D3BUJ4 Retrotransposon protein4.0e-1268.66Show/hide
Query:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS
        KDRATG  A+TFADID NV  DNDSVP EDGI+MEF AM   RMN+S + MM GRS QSSD R  SS
Subjt:  KDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGGCTAGAACGATGACGTCAAGTTTATCATCGCCAAGAGGGACATGTTCGATCATTGGGTCCAGGAAAGATCGAGCCACGGGGACCCGTGCAAAGACCTTTGC
AGACATCGATTTAAACGTGCCAGCCGATAACGATAGTGTCCCCGTAGAGGATGGCATCGACATGGAGTTCCTCGCTATGTCCAGCTCGAGGATGAACTTGTCCTCAGAGG
GCATGATGGGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGACGGGCTCTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGGCTAGAACGATGACGTCAAGTTTATCATCGCCAAGAGGGACATGTTCGATCATTGGGTCCAGGAAAGATCGAGCCACGGGGACCCGTGCAAAGACCTTTGC
AGACATCGATTTAAACGTGCCAGCCGATAACGATAGTGTCCCCGTAGAGGATGGCATCGACATGGAGTTCCTCGCTATGTCCAGCTCGAGGATGAACTTGTCCTCAGAGG
GCATGATGGGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGACGGGCTCTAGCTGA
Protein sequenceShow/hide protein sequence
MASARTMTSSLSSPRGTCSIIGSRKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS