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IVF0004243 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004243
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr02:11721464..11722204
RNA-Seq ExpressionIVF0004243
SyntenyIVF0004243
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]2.48e-7391.47Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDS--TSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDSSFIFIG S VPHPLLNNN   NGRKFGITSAKRTQDSDS   SSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDS--TSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  ELLKIGAFLVVPFCVFLVFSFSKFDSDSS
        +LLKIGA LVVPFCVFLVFSFSK+DSDSS
Subjt:  ELLKIGAFLVVPFCVFLVFSFSKFDSDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]1.09e-83100Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFLVFSFSKFDSDSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]4.52e-5979.53Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DSSFIF G+SA+PHPLL +N  NN RKFG TSAKRT DSDS SSTQ    KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

XP_023004836.1 uncharacterized protein LOC111498016 [Cucurbita maxima]1.29e-5878.74Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DSSFIF G+SA+PHPL+ +N  NN RKFG TSAKRT DSDS SSTQ    KFPSLRVSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+ 
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]5.60e-6181.1Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        MAMV+SSFIFIG+S VP+PL NNN   + RKF ITSAK T+DSDS S +  +Q KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+EEL
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFLVFSFS+ DSDSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein5.4e-5591.47Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQ--DSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDSSFIFIG S VPHPLLN   NNNGRKFGITSAKRTQ  DSDS SSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQ--DSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  ELLKIGAFLVVPFCVFLVFSFSKFDSDSS
        +LLKIGA LVVPFCVFLVFSFSK+DSDSS
Subjt:  ELLKIGAFLVVPFCVFLVFSFSKFDSDSS

A0A1S3B903 uncharacterized protein LOC1034873297.0e-63100Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFLVFSFSKFDSDSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

A0A6J1C0R6 uncharacterized protein LOC1110073011.5e-3671.2Show/hide
Query:  MVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLK
        M DS+FIF G SAV   L N    NN R F    AKRT DS +T S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLK
Subjt:  MVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLK

Query:  IGAFLVVPFCVFLVFSFSKFDSDSS
        IGAFLVVPFCVFL+ SF+K  +DSS
Subjt:  IGAFLVVPFCVFLVFSFSKFDSDSS

A0A6J1EZT4 uncharacterized protein LOC1114408613.3e-4479.53Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DSSFIF G+SA+PHPLL +  NNN RKFG TSAKRT DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

A0A6J1KT82 uncharacterized protein LOC1114980167.3e-4478.74Show/hide
Query:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DSSFIF G+SA+PHPL+ +  NNN RKFG TSAKRT DSDS SST   Q KFPSLRVSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+ 
Subjt:  MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGAFLVVPFCVFLVFSFSKFDSDSS
        LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLVFSFSKFDSDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein6.5e-2150Show/hide
Query:  NNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFSK
        N+NK  +        +KR   S+ ++  +P       ++V N ++ARS ++VL LGF+DAGYSGDWSRIG I+KETEELLKI AFLVVP C+FL  SFS 
Subjt:  NNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFSFSK

Query:  FDSD
          +D
Subjt:  FDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTATCTCCGCCGTACCTCATCCCCTTTTGAACAACAACAAAAACAATAATGGCAGAAAATTCGGAATCACTTCGGC
AAAACGTACACAAGATTCCGATTCCACTTCATCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTTC
TCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACAGAAGAATTGCTTAAGATTGGAGCTTTCTTGGTGGTTCCG
TTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCGGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
TCACTATTCTTCTTTTATGTAATTCTCTTAAGAAATTTAATGCAAGAATTCGTACTCCCCACTTGTTCTCTGTTTTTAATGGAAAAAAGATGAGGCCGTAATTCATTTCC
ACCGCCATTCACTTCAGATTTTCCATAACTGTCAATTGGCTATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTATCTCCGCCGTACCTCATCCCCTTTTGAACAAC
AACAAAAACAATAATGGCAGAAAATTCGGAATCACTTCGGCAAAACGTACACAAGATTCCGATTCCACTTCATCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAG
AGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAA
CAGAAGAATTGCTTAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCGGATTCTTCGTAAGTGTTTGGATGATGG
ATTCCCCAAAACGGTTAGAAATAATTTCAATTTAAAAATGGTAGGTGAGCTAAAGTTGTTCTTTTTGCTTAAAAGGGAGATCTTTG
Protein sequenceShow/hide protein sequence
MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVP
FCVFLVFSFSKFDSDSS