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IVF0004266 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004266
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:2875909..2876100
RNA-Seq ExpressionIVF0004266
SyntenyIVF0004266
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0035196 - production of miRNAs involved in gene silencing by miRNA (biological process)
GO:1903730 - regulation of phosphatidate phosphatase activity (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]3.24e-1974.6Show/hide
Query:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL
        MS +DAM  QVIEL+E IPNLTMAEKSKC+M++NQKVSLMRSFIKM DSM A Y ++LLGG+L
Subjt:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL

KAA0038274.1 retrotransposon protein [Cucumis melo var. makuwa]2.56e-2075.81Show/hide
Query:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD
        MS +DAM  QVIEL+E I NLTMAEKS C++++NQKVSLMRSFIKMSDSM AAYC++LLGGD
Subjt:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]4.15e-1974.19Show/hide
Query:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD
        MS +D M  QVIEL++ I NLTMAEKSKC+M++NQKVSLMRSFIKM D M AAYC+VLLGGD
Subjt:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]3.20e-24100Show/hide
Query:  QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL
        QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL
Subjt:  QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL

TYK19822.1 retrotransposon protein [Cucumis melo var. makuwa]5.10e-1981.13Show/hide
Query:  QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD
        QVIEL+E+IPNLTMAEKSKCI+++NQKVSLMRSFIKMSDSM  AYC++L GGD
Subjt:  QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD

TrEMBL top hitse value%identityAlignment
A0A5A7T479 Retrotransposon protein1.6e-1575.81Show/hide
Query:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD
        MS +DAM  QVIEL+E I NLTMAEKS C++++NQKVSLMRSFIKMSDSM AAYC++LLGGD
Subjt:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD

A0A5A7TYU4 Retrotransposon protein1.0e-1474.19Show/hide
Query:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD
        MS +D M  QVIEL++ I NLTMAEKSKC+M++NQKVSLMRSFIKM D M AAYC+VLLGGD
Subjt:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD

A0A5D3B9T0 Retrotransposon protein4.6e-1574.6Show/hide
Query:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL
        MS +DAM  QVIEL+E IPNLTMAEKSKC+M++NQKVSLMRSFIKM DSM A Y ++LLGG+L
Subjt:  MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL

A0A5D3D8E2 Retrotransposon protein3.9e-1481.13Show/hide
Query:  QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD
        QVIEL+E+IPNLTMAEKSKCI+++NQKVSLMRSFIKMSDSM  AYC++L GGD
Subjt:  QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD

A0A5D3DLC6 Retrotransposon protein8.9e-1998.18Show/hide
Query:  VQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL
        +QVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL
Subjt:  VQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCTGAAGGATGCGATGACAGTGCAGGTGATTGAGCTTATGGAGATCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTATCATGATAATGAATCAGAAGGT
GTCGCTCATGAGGAGCTTCATCAAGATGTCTGATTCGATGATGGCCGCTTACTGTAAGGTCCTCCTTGGCGGTGACCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCTGAAGGATGCGATGACAGTGCAGGTGATTGAGCTTATGGAGATCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTATCATGATAATGAATCAGAAGGT
GTCGCTCATGAGGAGCTTCATCAAGATGTCTGATTCGATGATGGCCGCTTACTGTAAGGTCCTCCTTGGCGGTGACCTGTGA
Protein sequenceShow/hide protein sequence
MSLKDAMTVQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGDL