CuGenDBv2

Gene ID	IVF0004282
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr07:16410058..16410480
RNA-Seq Expression	IVF0004282
Synteny	IVF0004282
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046247.1 uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]

2.13e-55

75.71

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Query:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+FG                  VNNENAS LAACMGFVRGNL VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGR+QLVCSVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]

3.70e-55

76.43

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Query:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  NEPSIRFIRECLQ+FG                  VNNENAS LA CMGFVRGNL VRYLGLPLL GRLRSND  PLIQRITSRIRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGRLQLV SVL S QVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]

1.04e-60

79.29

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Query:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +EPSIRFIRECLQ+FG                  VNNENAS+LAACMGFVRGNLPVRYLGLPLLTGRLRSNDC P+IQRITSRIRS  ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGRLQLVCSVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

TYK18951.1 uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]

2.13e-55

75.71

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Query:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+FG                  VNNENAS LAACMGFVRGNL VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGR+QLVCSVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

3.94e-55

75.71

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Query:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+FG                  VNNENAS LA CMGF RGNLPVRYLGLPLLTGRLRSNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRFG------------------VNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGRLQLV SVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

3.0e-47

75.71

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Query:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+F                  GVNNENAS LA CMGF RGNLPVRYLGLPLLTGRLRSNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGRLQLV SVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

A0A5A7TWG5 Reverse transcriptase domain-containing protein

1.8e-47

75.71

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Query:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+F                  GVNNENAS LAACMGFVRGNL VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGR+QLVCSVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein

4.5e-51

79.29

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Query:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +EPSIRFIRECLQ+F                  GVNNENAS+LAACMGFVRGNLPVRYLGLPLLTGRLRSNDC P+IQRITSRIRS  ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGRLQLVCSVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

A0A5D3D5X6 Reverse transcriptase domain-containing protein

1.8e-47

75.71

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Query:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+F                  GVNNENAS LAACMGFVRGNL VRYLGLPLLTGRL SNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGR+QLVCSVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

A0A5D3DXE4 Reverse transcriptase domain-containing protein

3.0e-47

75.71

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Query:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF
        MIFC  +E SIRFIR+CLQ+F                  GVNNENAS LA CMGF RGNLPVRYLGLPLLTGRLRSNDC PLIQRITS+IRS +ARVLSF
Subjt:  MIFCVVNEPSIRFIRECLQRF------------------GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSF

Query:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        AGRLQLV SVL SLQVYWA VFVLPAYVHNEVDKILRSYL
Subjt:  AGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.1e-04

32.43

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Query:  LPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL
        +P+L  R+  +    +++R++SR+     + LSFAGRL L  +VL S+ V+     +LP  + N +D++ R++L
Subjt:  LPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSYL

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

7.2e-17

45.54

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Query:  GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSY
        GV + + + +     F  G LPVRYLGLPLLT ++ ++D  PL+++I  RI   +AR LSFAGRLQL+ SV+ SL  +W   F LP+    E+D I  S+
Subjt:  GVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNEVDKILRSY

Query:  L
        L
Subjt:  L

Sequences

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CDS sequence

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ATGATATTTTGTGTTGTTAATGAGCCCTCTATCAGATTTATTCGAGAATGTCTTCAGAGGTTTGGAGTTAATAATGAGAATGCTTCTCGTTTGGCTGCTTGTATGGGTTT
TGTCCGTGGAAATCTCCCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGGTTACGTTCTAATGATTGTGTTCCTCTGATTCAGCGTATCACTAGTCGAATTCGTT
CTCGGTCTGCTCGAGTTCTTTCTTTTGCTGGTAGACTGCAGCTTGTTTGTTCTGTGCTTTGTAGCCTTCAAGTTTACTGGGCTATTGTGTTTGTTCTTCCTGCGTATGTG
CATAATGAGGTGGACAAGATTCTCAGATCTTATCTGTAG

mRNA sequence

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Protein sequence

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MIFCVVNEPSIRFIRECLQRFGVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSNDCVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYV
HNEVDKILRSYL

IVF0004282 (gene) of Melon (IVF77) v1 genome