CuGenDBv2

Gene ID	IVF0004304
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr09:14388499..14389504
RNA-Seq Expression	IVF0004304
Synteny	IVF0004304
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

5.85e-107

96.09

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGF RGNL VR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
        YLGLPLLTGRL SNDCAPLIQRITSQIRSW ARVLSFAGR+QLV SVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR

KAA0046247.1 uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]

6.97e-113

100

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
        YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]

9.91e-110

94.41

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADE SIRFIR+CLQKFGELSGLFANPRKS IFVAGVNNENAS LAACMGFVRGNL VR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
        YLGLPLLTGRL SNDCAP+IQRITS+IRSW ARVLSFAGR+QLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR

TYK18951.1 uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]

6.91e-113

100

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
        YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

5.85e-107

96.09

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGF RGNL VR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
        YLGLPLLTGRL SNDCAPLIQRITSQIRSW ARVLSFAGR+QLV SVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

9.3e-92

87.19

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGF RGNL VR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL
        YLGLPLLTGRL SNDCAPLIQRITSQIRSW ARVLSFAGR+QLV SVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR            W+D   P+ 
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL

Query:  QGG
        +GG
Subjt:  QGG

A0A5A7TWG5 Reverse transcriptase domain-containing protein

5.6e-97

90.64

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL
        YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR            W+D   P+ 
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL

Query:  QGG
        +GG
Subjt:  QGG

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein

3.0e-90

94.41

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADE SIRFIR+CLQKFGELSGLFANPRKS IFVAGVNNENAS LAACMGFVRGNL VR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
        YLGLPLLTGRL SNDCAP+IQRITS+IRSW ARVLSFAGR+QLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR

A0A5D3D5X6 Reverse transcriptase domain-containing protein

5.6e-97

90.64

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL
        YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR            W+D   P+ 
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL

Query:  QGG
        +GG
Subjt:  QGG

A0A5D3DXE4 Reverse transcriptase domain-containing protein

9.3e-92

87.19

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Query:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR
        MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLA CMGF RGNL VR
Subjt:  MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVR

Query:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL
        YLGLPLLTGRL SNDCAPLIQRITSQIRSW ARVLSFAGR+QLV SVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR            W+D   P+ 
Subjt:  YLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWR-----------VWLD---PWL

Query:  QGG
        +GG
Subjt:  QGG

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.0e-07

33.33

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Query:  LPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLW
        +P+L  R+  +    +++R++S++  W  + LSFAGR+ L  +VL S+ V+  S  +LP  + N +D++ R++LW
Subjt:  LPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLW

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.0e-21

46.15

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Query:  VAGVNNENASHLAACMGFVRGNLSVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILR
        +AGV + + + +     F  G L VRYLGLPLLT ++ ++D  PL+++I  +I  WTAR LSFAGR+QL+ SV+ SL  +W S F LP+    E+D I  
Subjt:  VAGVNNENASHLAACMGFVRGNLSVRYLGLPLLTGRLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILR

Query:  SYLW
        S+LW
Subjt:  SYLW

Sequences

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CDS sequence

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ATGGTGATGGAAGTTCTTTCTCGTATGCTGAACAAGATTCCTCAGAGTTTTCAATTTCACCATCGTTGTGAAAAGGTTAAGTTAACCCATCTGACCTTCGCCGATGACCT
TATGATATTTTGTGCTGCTGATGAGCTCTCTATCAGATTTATTCGAGATTGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTTGCAAATCCTAGGAAAAGCTCTATCT
TTGTTGCAGGAGTTAATAATGAGAATGCTTCTCATCTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCTCTGTTCGTTATCTTGGCCTTCCTCTTCTTACTGGTCGG
TTATGTTCTAATGATTGTGCTCCTCTGATTCAGCGTATCACTAGCCAAATTCGTTCTTGGACTGCTCGAGTTCTTTCGTTTGCTGGTAGAATGCAGCTTGTTTGTTCTGT
GCTTCGTAGCCTTCAAGTTTACTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCATAATGAGGTGGACAAGATTCTCAGATCTTATCTTTGGAGGGTTTGGCTTGATC
CGTGGTTGCAGGGGGGTGCCATTCTGGAGCTAGACTTTCTGACTTTATTGACCCAGATGGAGAATGGCTTTGGCCACGAGTTTCTTTGGAATTAA

mRNA sequence

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Protein sequence

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MVMEVLSRMLNKIPQSFQFHHRCEKVKLTHLTFADDLMIFCAADELSIRFIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVRYLGLPLLTGR
LCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEVDKILRSYLWRVWLDPWLQGGAILELDFLTLLTQMENGFGHEFLWN

IVF0004304 (gene) of Melon (IVF77) v1 genome