CuGenDBv2

Gene ID	IVF0004320
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr02:12957343..12957994
RNA-Seq Expression	IVF0004320
Synteny	IVF0004320
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

2.20e-96

95.76

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+LLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQ+KCKDYVIARVLVDNGS LNIMPKSTLL LPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

KAA0037781.1 uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa]

9.33e-98

94.55

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        M IIAKDIEYKKL TDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

KAA0065724.1 uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa]

5.74e-101

95.71

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSE KIIEQMHHT ARISLLSLFLNSEPHR+VLLDILNKAHVGHDISVEKFSGIIGNITSSNSIV TDDEIPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLR
        EGLGHTKALHIQVKCKDYVIARVLVDN STLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG R
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLR

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

4.03e-98

98.18

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

TYK27304.1 uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa]

9.33e-98

94.55

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        M IIAKDIEYKKL TDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0R1 Uncharacterized protein

1.3e-81

95.76

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+LLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQ+KCKDYVIARVLVDNGS LNIMPKSTLL LPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

A0A5A7T7R4 Ribonuclease H

4.4e-82

96.36

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNIT  NSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVK FDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

A0A5A7TRL7 Ribonuclease H

3.3e-82

96.36

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYK L TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISV+KFSGIIGNITSSNSIVFTDD+IPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

6.3e-81

95.15

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDIS+EKFSGIIGNITSSN IVFTDD+IPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVK F+G RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

A0A5D3DEB3 Retrotrans_gag domain-containing protein

1.0e-83

98.18

Show/hide

Query:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKL TDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGS LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDG RRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTTTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAAT
GCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTT
CAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCAT
ATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAACTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTC
ACACATAAAGTCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTTGCGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATT
GA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPIIAKDIEYKKLFTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALH
IQVKCKDYVIARVLVDNGSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGLRREDVLGFTPQEWCHPHCIKN

IVF0004320 (gene) of Melon (IVF77) v1 genome