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IVF0004322 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004322
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein RADIALIS-like 1
Genome locationchr01:16580239..16581610
RNA-Seq ExpressionIVF0004322
SyntenyIVF0004322
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]2.42e-51100Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]2.34e-4996.2Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SR N
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]9.89e-5198.73Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]1.59e-4792.41Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]2.95e-4183.33Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRG
        MASMS+HGSG WTAKQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVK HY LL+EDVK IESG+VPFPYR+SRG
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRG

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein2.0e-3696.2Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MAS+SAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYR+SR N
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

A0A1S3BGF6 protein RADIALIS-like 11.8e-3798.73Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

A0A5A7SYM4 Protein RADIALIS-like 16.3e-38100Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

A0A6J1GJG0 protein RADIALIS-like 15.0e-3592.41Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

A0A6J1IA78 protein RADIALIS-like 15.0e-3592.41Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MASMSAHGSGVWTAKQNKAFEEALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+EDVKHIESGKVPFPYR+SRG+
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.4e-2670.51Show/hide
Query:  ASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRG
        +SMS+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP YRTS G
Subjt:  ASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRG

Q1A173 Protein RADIALIS-like 62.7e-2263.75Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y+T   N
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN

Q58FS3 Transcription factor RADIALIS2.0e-2570.13Show/hide
Query:  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN
        S  GSG  W+AK+NKAFE ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+IESGKVPFP YRT+ GN
Subjt:  SAHGSG-VWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN

Q6NNN0 Protein RADIALIS-like 32.7e-2262.03Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN
        MAS S   S  WT K+NK FE ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG+ P P   S GN
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

Q9SIJ5 Protein RADIALIS-like 22.0e-2567.95Show/hide
Query:  SMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN
        SMS++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++ IE+G VPFP Y+T+ GN
Subjt:  SMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.7e-2264.47Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRT
        MAS S   S  WT+KQNK FE ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED+ +IE   VP P Y+T
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRT

AT1G75250.1 RAD-like 62.0e-2363.75Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y+T   N
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN

AT1G75250.2 RAD-like 62.0e-2363.75Show/hide
Query:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN
        MAS S      WT  QNK FE ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED+ +IE+G+VP P Y+T   N
Subjt:  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN

AT2G21650.1 Homeodomain-like superfamily protein1.4e-2667.95Show/hide
Query:  SMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN
        SMS++GSG WT KQNKAFE ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++ IE+G VPFP Y+T+ GN
Subjt:  SMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRGN

AT4G39250.1 RAD-like 13.8e-2770.51Show/hide
Query:  ASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRG
        +SMS+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+  IE+G VPFP YRTS G
Subjt:  ASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFP-YRTSRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGGAAGCTTTGGCAATGTATGATAAAGACACACCCGATAGATGGTTGAA
TGTTGCAAAAGCCATTGGTGGAAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAGGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATA
GAACCTCAAGAGGCAATTAA
mRNA sequenceShow/hide mRNA sequence
GTTTTTCTCTCTCCATTATTTCAAACCCAATTAAAGTTAGAAATATACATTTAAGAAAATAAAAGTATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAA
GCAAAACAAGGCATTTGAGGAAGCTTTGGCAATGTATGATAAAGACACACCCGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACTGAAGAGGAAGTCAAAA
GGCATTACCAACTTCTTTTGGAGGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAACCTCAAGAGGCAATTAAGTGCTACTAACATATGATCAAAAG
ATGGAGGATGAGAAACATGAAGTTGAATGAAGCCAGGTGCACGCAGTACTGGAAGAATAAAAAGGACAGAGCCATTTTCTTGCTGTTGCATACCTTTTTTTTTTCCCTAT
TTTATCTTTTCAAATCCAATTGCAGTAGGTCAAATGAATAAGCTTTTATGAATTTATTATATTAAATCAAACCATCAATATTATCATTTATATTGACA
Protein sequenceShow/hide protein sequence
MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN