CuGenDBv2

Gene ID	IVF0004349
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr12:2349655..2349957
RNA-Seq Expression	IVF0004349
Synteny	IVF0004349
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025808.1 reverse transcriptase [Cucumis melo var. makuwa]

2.22e-62

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFR G+QVLIKLRPEQV+FRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

KAA0032476.1 reverse transcriptase [Cucumis melo var. makuwa]

9.83e-62

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN+VTRP IDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

KAA0038841.1 reverse transcriptase [Cucumis melo var. makuwa]

1.65e-62

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN+VTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

KAA0050844.1 reverse transcriptase [Cucumis melo var. makuwa]

8.77e-62

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

TYK28810.1 reverse transcriptase [Cucumis melo var. makuwa]

8.55e-61

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRP+IDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U921 Reverse transcriptase

8.5e-48

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5A7V2E6 Reverse transcriptase

8.5e-48

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5D3C1P3 Reverse transcriptase

8.5e-48

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5D3C976 Reverse transcriptase

8.5e-48

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAG+QVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKV NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5D3CEJ8 Reverse transcriptase

8.5e-48

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Query:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFR G+QVLIKLRPEQV+FRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAGTGGGCAGATAAGAAGCGGCGACCTCTTGAGTTTCGAGCGGGGAACCAGGTACTCATCAAACTACGACCAGAGCAAGTCAGGTTTCGAGGACGCAAAGACCA
GCGTCTCGTCAGGAAGTACGAAGGACCAGTTGAAGTGCTGAAAAAGGTAAGGAATACTTCTTACAGAGTAGCGTTGCCCACATGGATGAAAATCTACCCAGTAATTCATG
TTAGTAACCTGAAACCGTACCATCAAGACACTGAGGACCTGCAACGGAATATCGTAACTCGCCCAATTATCGACCTTAGTTAG

mRNA sequence

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Protein sequence

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MKKWADKKRRPLEFRAGNQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVRNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

IVF0004349 (gene) of Melon (IVF77) v1 genome