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IVF0004380 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004380
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L18-like
Genome locationchr11:25519477..25519991
RNA-Seq ExpressionIVF0004380
SyntenyIVF0004380
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035229.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa]1.70e-47100Show/hide
Query:  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT
        MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT
Subjt:  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT

XP_022140774.1 uncharacterized protein LOC111011356 [Momordica charantia]5.08e-3182.89Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YVLR   SLKYI ANVVDRNNGR+VA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]1.02e-3082.89Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]1.02e-3082.89Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]3.58e-3184.21Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YVLR   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

TrEMBL top hitse value%identityAlignment
A0A2P2K4N5 Uncharacterized protein1.7e-2277.5Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAF
        M V K YVLR   SLKYI ANVVDRNNGRIVA ASTVEHSIK SLECGRSCNAK AAV+GEVLAMRLKV+GL++G+   F
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAF

A0A5D3DFB1 50S ribosomal protein L18-like5.1e-35100Show/hide
Query:  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT
        MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT
Subjt:  MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT

A0A6J1CGQ4 uncharacterized protein LOC1110113565.8e-2382.89Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YVLR   SLKYI ANVVDRNNGR+VA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

A0A6J1FXG0 uncharacterized protein LOC1114484609.9e-2382.89Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

A0A6J1JBQ5 uncharacterized protein LOC1114836109.9e-2382.89Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YV+R   SLKYI ANVVDRNNGRIVA ASTVEHSIKGSLECGRSCNAK AAVVGEVLAMRLKVDGL +G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK

SwissProt top hitse value%identityAlignment
A1KRI9 50S ribosomal protein L187.6e-0437.14Show/hide
Query:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR
        +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A + K  G+ +
Subjt:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR

A9M3V0 50S ribosomal protein L187.6e-0437.14Show/hide
Query:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR
        +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A + K  G+ +
Subjt:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR

Q5F5U3 50S ribosomal protein L187.6e-0437.14Show/hide
Query:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR
        +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A + K  G+ +
Subjt:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR

Q7DDT0 50S ribosomal protein L187.6e-0437.14Show/hide
Query:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR
        +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A + K  G+ +
Subjt:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR

Q9JQQ6 50S ribosomal protein L187.6e-0437.14Show/hide
Query:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR
        +VR C V RS  +I A V+     +++A AST+E  ++GSL+ G   N + AA+VG+ +A + K  G+ +
Subjt:  IVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNR

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein8.9e-2475Show/hide
Query:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK
        M V K YVLR   S+KYI ANVVDRNNGRIV  ASTVEH+IK SLECGR+CNAK AA+VGEVLAMRLKV+GL  G+
Subjt:  MIVRKCYVLR---SLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGTAAGAAAGTGCTATGTGCTACGATCTTTGAAGTACATAATAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAATTGCGTCCACAGTCGAACACTC
CATCAAAGGCTCACTTGAATGTGGCCGGTCTTGCAATGCTAAGACAGCAGCCGTTGTTGGAGAGGTGTTGGCTATGCGTCTCAAAGTCGATGGTCTCAACAGGGGCAAGG
AAGAGGCATTCACGCAAACATAA
mRNA sequenceShow/hide mRNA sequence
GACATTTTAACATTTTGGATAGGTGATTAGAACATGGCGTTTGAGAAAATCGTTGCAAATGATAGTAAGAAAGTGCTATGTGCTACGATCTTTGAAGTACATAATAGCTA
ATGTGGTAGATAGAAATAATGGACGGATTGTCGCAATTGCGTCCACAGTCGAACACTCCATCAAAGGCTCACTTGAATGTGGCCGGTCTTGCAATGCTAAGACAGCAGCC
GTTGTTGGAGAGGTGTTGGCTATGCGTCTCAAAGTCGATGGTCTCAACAGGGGCAAGGAAGAGGCATTCACGCAAACATAAAAAAGGAAATCGAGAAGAAAGGCTTTAGA
AACCACACAAAAATCTGGGCTATATTCGCTCAAGAATAACGGAGTTAACTTATACTCGACAACAATGTTGACGAGACATCTCGGTCAAGCTTTCAATAAGCTCCTAAGGC
AAATCTTATCATCCTTCCCTAGATGACTAGAGCTTAACTAGTCATGAGGAAAGACTAGATGCTGCTAAAATGGAA
Protein sequenceShow/hide protein sequence
MIVRKCYVLRSLKYIIANVVDRNNGRIVAIASTVEHSIKGSLECGRSCNAKTAAVVGEVLAMRLKVDGLNRGKEEAFTQT