; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0004391 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004391
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationchr12:8680039..8681787
RNA-Seq ExpressionIVF0004391
SyntenyIVF0004391
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABI97454.1 ribosomal protein L16, partial [Cucumis sativus]5.54e-7499.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

AHM88685.1 ribosomal protein L16 [Lagenaria siceraria]3.42e-7398.23Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

KAA0040686.1 ribosomal protein L16 [Cucumis melo var. makuwa]1.56e-73100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPI
        AISIAASKMPI
Subjt:  AISIAASKMPI

YP_004841821.1 ribosomal protein L16 [Cucumis melo subsp. melo]5.91e-7499.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

YP_009505117.1 ribosomal protein L16 [Cucurbita pepo]3.31e-7398.23Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

TrEMBL top hitse value%identityAlignment
A0A1S4EU42 50S ribosomal protein L16, chloroplastic2.0e-5699.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

A0A1X9Q1F7 50S ribosomal protein L16, chloroplastic (Fragment)2.0e-5699.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

A0A218KG73 50S ribosomal protein L16, chloroplastic2.0e-5699.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

A0A6M8Y6H6 50S ribosomal protein L16, chloroplastic2.0e-5699.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

W8E710 Ribosomal protein L162.0e-5699.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

SwissProt top hitse value%identityAlignment
A0ZZ72 50S ribosomal protein L16, chloroplastic5.2e-5791.45Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
        ++  GRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIF DKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA

Query:  ENIARKAISIAASKMPI
        ENIARKAISI ASKMPI
Subjt:  ENIARKAISIAASKMPI

B1NWI7 50S ribosomal protein L16, chloroplastic5.2e-5791.45Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
        ++  GRMKGI++RGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA

Query:  ENIARKAISIAASKMPI
        ENIARKAISIAASKMPI
Subjt:  ENIARKAISIAASKMPI

Q09ME0 50S ribosomal protein L16, chloroplastic8.0e-5893.16Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
        ++  GRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA

Query:  ENIARKAISIAASKMPI
        ENIARKAISIAASKMPI
Subjt:  ENIARKAISIAASKMPI

Q2L940 50S ribosomal protein L16, chloroplastic1.8e-5792.31Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
        ++  GRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIF DKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA

Query:  ENIARKAISIAASKMPI
        ENIARKAISIAASKMPI
Subjt:  ENIARKAISIAASKMPI

Q4VZN1 50S ribosomal protein L16, chloroplastic5.5e-5999.12Show/hide
Query:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
        GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA
Subjt:  GRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIA

Query:  RKAISIAASKMPI
        RKAISIAASKMPI
Subjt:  RKAISIAASKMPI

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 121.5e-3871.56Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
        KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF+DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +AR+A
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA

Query:  ISIAASKMP
        ISIAASK+P
Subjt:  ISIAASKMP

ATCG00790.1 ribosomal protein L168.5e-5586.32Show/hide
Query:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA
        ++  GR+KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIF DKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV 
Subjt:  QRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVA

Query:  ENIARKAISIAASKMPI
        ENIARKAISIAASKMPI
Subjt:  ENIARKAISIAASKMPI

ATMG00080.1 ribosomal protein L164.7e-2144.63Show/hide
Query:  RTGR-MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRIL
        R GR  +G    G  + FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F+D P+T +PTE RMG GKG+P  W+A V  G+I 
Subjt:  RTGR-MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRIL

Query:  YEMSGVAENIARKAISIAASK
        +EM GV+   AR+A ++AA K
Subjt:  YEMSGVAENIARKAISIAASK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGAGAAGGACGGGAAGAATGAAAGGAATATCTTATCGAGGAAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAG
ACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTTCGGACAAACCCGTTACACTAAGACCCACAGAAACAC
GTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATT
TCAATAGCGGCATCCAAAATGCCTATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGAGAAGGACGGGAAGAATGAAAGGAATATCTTATCGAGGAAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAG
ACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTTCGGACAAACCCGTTACACTAAGACCCACAGAAACAC
GTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATT
TCAATAGCGGCATCCAAAATGCCTATATGA
Protein sequenceShow/hide protein sequence
MDQRRTGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFSDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAI
SIAASKMPI