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IVF0004392 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004392
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionnuclear transcription factor Y subunit B-4
Genome locationchr02:723973..724401
RNA-Seq ExpressionIVF0004392
SyntenyIVF0004392
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050890.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]3.63e-9699.3Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYL KYREVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
Subjt:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

KAE8653368.1 hypothetical protein Csa_006911 [Cucumis sativus]7.39e-5286.67Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+L  +REVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDE
        IKVDE
Subjt:  IKVDE

XP_004135780.1 nuclear transcription factor Y subunit B-4 [Cucumis sativus]1.06e-5974.13Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+L  +REVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDE-YKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDE +K K                DNH    GEIGETSSPN
Subjt:  IKVDE-YKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

XP_008451142.1 PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo]7.63e-98100Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
Subjt:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

XP_023546470.1 nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]4.06e-5164.23Show/hide
Query:  NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVD
        NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NRRTLNGDDICWAF S GLDNYAE  AKYL KYR+VERI   
Subjt:  NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVD

Query:  EYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSP
        ++K  I       D D +++++  + ++   GETS P
Subjt:  EYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSP

TrEMBL top hitse value%identityAlignment
A0A0A0LW12 CBFD_NFYB_HMF domain-containing protein3.3e-4573.24Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+L  +REVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDE                 + +DNH    GEIGETSSPN
Subjt:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

A0A1S3BRX1 nuclear transcription factor Y subunit B-41.5e-74100Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
Subjt:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

A0A5A7U6S7 Nuclear transcription factor Y subunit B-42.9e-7399.3Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYL KYREVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
Subjt:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

A0A5D3CG76 Nuclear transcription factor Y subunit B-41.5e-74100Show/hide
Query:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
        MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER
Subjt:  MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER

Query:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
        IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN
Subjt:  IKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like5.1e-3864.08Show/hide
Query:  NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVD
        NNGDE L+LPIANV R+MKKI+PQK KISKEAK TMQECA EFISFVTSEAA++CH +NRRTLNGDDICWAF S GLDNYAE  AKYL KYR++ERI   
Subjt:  NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVD

Query:  EYKCKIT-------QRLLPQDDDDKEQEDNHRSIDGEIGETS
        ++K  I        Q    + + ++EQE       GEIGETS
Subjt:  EYKCKIT-------QRLLPQDDDDKEQEDNHRSIDGEIGETS

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-48.4e-3055.28Show/hide
Query:  DEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYK
        DE   LPIANV R+MK+I+P   KISKEAK+T+QECA EFISFVT EA+++CH ENR+T+NGDDI WA ++ GLDNYA+   ++LHKYRE ER + +  K
Subjt:  DEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYK

Query:  CKITQRLLPQDDDDKEQEDNHRS
                  +D   E+E N RS
Subjt:  CKITQRLLPQDDDDKEQEDNHRS

O82248 Nuclear transcription factor Y subunit B-56.0e-2861.7Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEY
        LPIANV RIMK I+P   K+SKEAK+TMQEC +EFISFVT EA+ +CH E R+T+NGDDICWA A+ G D+YA    KYLH+YR +E  K + +
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEY

P25209 Nuclear transcription factor Y subunit B2.8e-2559.77Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVE
        LPIAN+ RIMKK IP  GKI+K+AK+T+QEC +EFISF+TSEA+ +C  E R+T+NGDD+ WA A+ G ++Y E    YL KYRE+E
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVE

Q60EQ4 Nuclear transcription factor Y subunit B-32.8e-2559.77Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVE
        LPIAN+ RIMKK IP  GKI+K+AK+T+QEC +EFISF+TSEA+ +C  E R+T+NGDD+ WA A+ G ++Y E    YL KYRE+E
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVE

Q9SIT9 Nuclear transcription factor Y subunit B-73.7e-2548.41Show/hide
Query:  NHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIK
        N+NN ++   LPIANV RIMKK++P  GKISK+AK+T+QEC +EFISFVT EA+ +C  E R+T+NGDDI WA  + G ++Y      YL KYR+ E  K
Subjt:  NHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIK

Query:  VDEYKCKITQRLLPQDDDDKEQEDNH
        V+  K    Q+   Q     +Q+++H
Subjt:  VDEYKCKITQRLLPQDDDDKEQEDNH

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B46.0e-3155.28Show/hide
Query:  DEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYK
        DE   LPIANV R+MK+I+P   KISKEAK+T+QECA EFISFVT EA+++CH ENR+T+NGDDI WA ++ GLDNYA+   ++LHKYRE ER + +  K
Subjt:  DEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYK

Query:  CKITQRLLPQDDDDKEQEDNHRS
                  +D   E+E N RS
Subjt:  CKITQRLLPQDDDDKEQEDNHRS

AT2G13570.1 nuclear factor Y, subunit B72.6e-2648.41Show/hide
Query:  NHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIK
        N+NN ++   LPIANV RIMKK++P  GKISK+AK+T+QEC +EFISFVT EA+ +C  E R+T+NGDDI WA  + G ++Y      YL KYR+ E  K
Subjt:  NHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIK

Query:  VDEYKCKITQRLLPQDDDDKEQEDNH
        V+  K    Q+   Q     +Q+++H
Subjt:  VDEYKCKITQRLLPQDDDDKEQEDNH

AT2G47810.1 nuclear factor Y, subunit B54.3e-2961.7Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEY
        LPIANV RIMK I+P   K+SKEAK+TMQEC +EFISFVT EA+ +CH E R+T+NGDDICWA A+ G D+YA    KYLH+YR +E  K + +
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEY

AT4G14540.1 nuclear factor Y, subunit B31.7e-2558.62Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVE
        LPIANV RIMKK +P   KISK+AK+T+QEC +EFISF+T EA+ +C  E R+T+NGDD+ WA  + G ++Y E    YL KYREVE
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVE

AT5G47640.1 nuclear factor Y, subunit B22.2e-2551.92Show/hide
Query:  NHNNGDEFLE-------LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKY
        N+ NG   L        LPIANV RIMKK +P   KISK+AK+TMQEC +EFISFVT EA+ +C  E R+T+NGDD+ WA  + G ++Y E    YL ++
Subjt:  NHNNGDEFLE-------LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKY

Query:  REVE
        RE+E
Subjt:  REVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACCATAATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCCAA
GAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAGATGTCACTATGAGAATAGAAGAACTCTTAATGGTGATGATATTTGTT
GGGCCTTCGCTTCTTCTGGTTTAGATAATTATGCTGAGGTTTTTGCTAAGTACTTGCATAAGTATAGAGAAGTTGAAAGAATCAAGGTTGATGAATATAAATGCAAAATT
ACTCAACGACTACTACCACAAGATGATGATGATAAAGAACAAGAAGATAATCATAGATCTATTGATGGAGAGATCGGTGAAACCTCTTCACCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACCATAATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCCAA
GAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAGATGTCACTATGAGAATAGAAGAACTCTTAATGGTGATGATATTTGTT
GGGCCTTCGCTTCTTCTGGTTTAGATAATTATGCTGAGGTTTTTGCTAAGTACTTGCATAAGTATAGAGAAGTTGAAAGAATCAAGGTTGATGAATATAAATGCAAAATT
ACTCAACGACTACTACCACAAGATGATGATGATAAAGAACAAGAAGATAATCATAGATCTATTGATGGAGAGATCGGTGAAACCTCTTCACCAAATTAG
Protein sequenceShow/hide protein sequence
MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKI
TQRLLPQDDDDKEQEDNHRSIDGEIGETSSPN