; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0004449 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004449
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchr05:24679706..24680977
RNA-Seq ExpressionIVF0004449
SyntenyIVF0004449
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]6.85e-7290.3Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-TEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK +EESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-TEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNN

Query:  LLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]8.46e-8499.25Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
        MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK+EESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL

Query:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Subjt:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

XP_016902308.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo]1.56e-7784.52Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------------LPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAV
        MASTLLPHSRLLLKGSSKLLPSSTMAAP                       LPTLQKMKMGRIKCKVEEKPEGKK+EESMVPGTVAAVAMAALAAAGPAV
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------------LPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAV

Query:  ALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        ALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Subjt:  ALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]1.31e-6277.44Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
        MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+++ES++ GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL

Query:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]5.44e-7187.22Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
        MASTLL HSRLLLKGSSK+LPS  +AA RLP LQKMK G IKC+VEEKPEGKK+EES+V GT+AAVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL

Query:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LGWILAG+F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein1.1e-5390.3Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-TEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK +EESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-TEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNN

Query:  LLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein9.6e-6399.25Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
        MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK+EESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL

Query:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Subjt:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

A0A1S4E257 PSII 6.1 kDa protein3.2e-5884.52Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------------LPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAV
        MASTLLPHSRLLLKGSSKLLPSSTMAAP                       LPTLQKMKMGRIKCKVEEKPEGKK+EESMVPGTVAAVAMAALAAAGPAV
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPR----------------------LPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAV

Query:  ALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        ALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
Subjt:  ALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein1.3e-4677.44Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
        MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+++ES++ GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL

Query:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LGWILAGMFG IWALYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

A0A6J1KED2 PSII 6.1 kDa protein1.4e-4579.7Show/hide
Query:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL
        MAS+LL  SR+LLKGSS +LPS  MAA RLP   KMK   IKCK EEK EGK++EE MV GTVAAVAMA +AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNL

Query:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        LGWIL GMFGLIW+LYFVYASSLDED+DSGLSL
Subjt:  LGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.7e-2457.98Show/hide
Query:  LLPSSTMAAP--RLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWA
        L P+  ++AP   LP + K K G ++C +E     K+   S++   V+A A AAL A  + PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIW 
Subjt:  LLPSSTMAAP--RLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWA

Query:  LYFVYASSLDEDEDSGLSL
         +FVY SSL+EDE+SGLSL
Subjt:  LYFVYASSLDEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic2.0e-2551.47Show/hide
Query:  STLLPHSRLLLKGSSKLLPSSTMAAPRLPTL---QKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLS
        +T+   S   L   + L+ +S +     P L      K  ++ C +E KP   +T  +      A++  AA AA  + PA+ALVDERMSTEGTGLPFGLS
Subjt:  STLLPHSRLLLKGSSKLLPSSTMAAPRLPTL---QKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLS

Query:  NNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL
        NNLLGWIL G+FGLIWALYFVYAS L+EDE+SGLSL
Subjt:  NNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic5.7e-2048.28Show/hide
Query:  SSKLLPSSTMAAP-RLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWA
        ++ ++  + +A P  LP ++  +  R++C   ++     T  + V G  A++ +A  A A PA+ALVDERMSTEGTGL  GLSNNLLGWIL G+FGLIW+
Subjt:  SSKLLPSSTMAAP-RLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWA

Query:  LYFVYASSLDEDEDSG
        LY +Y S L+EDE+SG
Subjt:  LYFVYASSLDEDEDSG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic2.8e-1148.19Show/hide
Query:  TEESMVPGTVAAVA-MAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLD--EDEDSGLSL
        T  S V   VA ++ + A  AA PA ALVDERM+ +GTG PFG+++ +LGW+L G+FG +WA++F+    L   ED D GL L
Subjt:  TEESMVPGTVAAVA-MAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYASSLD--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.2e-2557.98Show/hide
Query:  LLPSSTMAAP--RLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWA
        L P+  ++AP   LP + K K G ++C +E     K+   S++   V+A A AAL A  + PA+ALVDERMSTEGTGLPFGLSNNLLGWIL G+FGLIW 
Subjt:  LLPSSTMAAP--RLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAA--AGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWA

Query:  LYFVYASSLDEDEDSGLSL
         +FVY SSL+EDE+SGLSL
Subjt:  LYFVYASSLDEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCCCAGGTTGCCCACGTTGCAAAAGATGAA
GATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGACAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCTGCATTGGCGGCGG
CAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGGGATGTTTGGT
TTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
AAATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAAAAAAAAGAACACGAGATCCAAGTTTTACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGCAGGTGTT
TTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTCCATCCTCAACAATGGCAGCTCCCAGGTTGCCCACGT
TGCAAAAGATGAAGATGGGAAGGATAAAATGTAAGGTGGAAGAGAAGCCAGAAGGGAAGAAGACAGAAGAAAGCATGGTTCCGGGGACAGTGGCCGCAGTGGCGATGGCT
GCATTGGCGGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGATGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGC
TGGGATGTTTGGTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCTCTTTGAATCAATCACCCAAATTTCTTAAAAT
GGAAGTAATGGTTGTATTCATTTTTTCACCGTTCACCCAATTGCTCAGTTCAACCATAACTTTTCATGTATTAATTCCAAGTATACATATCTACATTTTCAGCTCAATCA
TTGTACAAAATTGTTGATTATTGAGCTAGATTATTTTTAATAAAAAGATGAG
Protein sequenceShow/hide protein sequence
MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKTEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFG
LIWALYFVYASSLDEDEDSGLSL