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IVF0004460 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004460
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:10436535..10437080
RNA-Seq ExpressionIVF0004460
SyntenyIVF0004460
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]8.01e-3657.14Show/hide
Query:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG
        M RT FSRR  +  P        V +IS SIF A   RTSTHT  ML   F  GIGREASSLEGEL  DP+  KRW  L TSG+R  GVRNHWKCTCS  
Subjt:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG

Query:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP
        N LSSRTSGV P K +  M +T FS    KS P
Subjt:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.80e-4160.9Show/hide
Query:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG
        M R+ FSR   +S  PTVSS+C V +I+ SIF A  PRTSTHT  ML D F  GIG+EASSLEGEL C+P+ SKRW  LPTS +RS G+RNH KCT  +G
Subjt:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG

Query:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP
        NGLSSRT    PKK +A MP+T FS  G KS P
Subjt:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]1.86e-3576.74Show/hide
Query:  PCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQAIMPQTHFSHHGV
        P ML DTF  GIGREASSLEGEL CDP+ SKRW  LPTSG+RS GVRNHWKCTCS+GNGLSSRTSG RPKK  A MP+T FS  GV
Subjt:  PCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQAIMPQTHFSHHGV

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.80e-3548.21Show/hide
Query:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCY-----------------------------------------------
        M +T FSR   +S PPTVS++C V + S SIFGA  PRTSTHTP ML DTF                                                 
Subjt:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCY-----------------------------------------------

Query:  -------GIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKK
               GIGREASSLEGEL CDP+ SKRW  LPT G+RS G RNHWKCTCS+GNGLSSRTSG RP+K
Subjt:  -------GIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKK

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]4.61e-3667.59Show/hide
Query:  TVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQ
        TVSS+  + +IS  IFGAH PRTSTHT  ML D F  GIGREASSLEGELRCDP+W KRW  L TSG+ S GVRN+WK TCS+ N L SRTS V PKK  
Subjt:  TVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQ

Query:  AIMPQTHF
        A MPQT F
Subjt:  AIMPQTHF

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein6.1e-2857.14Show/hide
Query:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG
        M RT FSRR  +  P        V +IS SIF A   RTSTHT  ML   F  GIGREASSLEGEL  DP+  KRW  L TSG+R  GVRNHWKCTCS  
Subjt:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG

Query:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP
        N LSSRTSGV P K +  M +T FS    KS P
Subjt:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein3.0e-3560.9Show/hide
Query:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG
        M R+ FSR   +S  PTVSS+C V +I+ SIF A  PRTSTHT  ML D F  GIG+EASSLEGEL C+P+ SKRW  LPTS +RS G+RNH KCT  +G
Subjt:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKG

Query:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP
        NGLSSRT    PKK +A MP+T FS  G KS P
Subjt:  NGLSSRTSGVRPKKMQAIMPQTHFSHHGVKSSP

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 402.1e-2876.74Show/hide
Query:  PCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQAIMPQTHFSHHGV
        P ML DTF  GIGREASSLEGEL CDP+ SKRW  LPTSG+RS GVRNHWKCTCS+GNGLSSRTSG RPKK  A MP+T FS  GV
Subjt:  PCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQAIMPQTHFSHHGV

A0A5D3DFP2 Uncharacterized protein8.5e-3048.81Show/hide
Query:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTP-----------C-------------------------------------------M
        M +T FSR   +S PPTVS++C V + S SIFGA  PRTSTHTP           C                                           M
Subjt:  MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTP-----------C-------------------------------------------M

Query:  LSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKK
        L DTF  GIGREASSLEGEL CDP+ SKRW  LPT G+RS G RNHWKCTCS+GNGLSSRTSG RP+K
Subjt:  LSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKK

A0A5D3DIF8 Gag/pol protein1.7e-3067.59Show/hide
Query:  TVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQ
        TVSS+  + +IS  IFGAH PRTSTHT  ML D F  GIGREASSLEGELRCDP+W KRW  L TSG+ S GVRN+WK TCS+ N L SRTS V PKK  
Subjt:  TVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGVRPKKMQ

Query:  AIMPQTHF
        A MPQT F
Subjt:  AIMPQTHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGAACTCCATTTTCCCGTCGTGACGTAGAAAGCGGTCCCCCGACGGTTTCTTCAATTTGCATCGTATCGATCATAAGTCATTCGATCTTTGGGGCTCATATGCC
GAGGACTTCAACCCACACTCCTTGCATGCTCTCTGACACGTTTTGCTATGGTATAGGTCGAGAAGCGAGCTCATTGGAGGGAGAACTAAGGTGTGATCCACAATGGTCTA
AAAGATGGCTAACGCTTCCAACGAGTGGCAAACGCTCGCTCGGTGTTAGAAACCACTGGAAATGCACTTGCAGCAAAGGAAACGGTCTGAGCTCGAGGACTTCTGGTGTT
CGTCCTAAGAAAATGCAAGCGATAATGCCCCAGACTCATTTTTCCCATCATGGGGTAAAAAGTAGTCCCTCCGACGGTTTCTTCCCTTTTCATCGTATCGGTCATAAATC
TTTCGATCTTCGGGGCTCGTACTTCAAGGACTCCAATCGAAACTCCTGGCATGCTCCCTGTGACGTTTTCCCAAGGTTTCTTACATTTGATTCGTATTGGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGAACTCCATTTTCCCGTCGTGACGTAGAAAGCGGTCCCCCGACGGTTTCTTCAATTTGCATCGTATCGATCATAAGTCATTCGATCTTTGGGGCTCATATGCC
GAGGACTTCAACCCACACTCCTTGCATGCTCTCTGACACGTTTTGCTATGGTATAGGTCGAGAAGCGAGCTCATTGGAGGGAGAACTAAGGTGTGATCCACAATGGTCTA
AAAGATGGCTAACGCTTCCAACGAGTGGCAAACGCTCGCTCGGTGTTAGAAACCACTGGAAATGCACTTGCAGCAAAGGAAACGGTCTGAGCTCGAGGACTTCTGGTGTT
CGTCCTAAGAAAATGCAAGCGATAATGCCCCAGACTCATTTTTCCCATCATGGGGTAAAAAGTAGTCCCTCCGACGGTTTCTTCCCTTTTCATCGTATCGGTCATAAATC
TTTCGATCTTCGGGGCTCGTACTTCAAGGACTCCAATCGAAACTCCTGGCATGCTCCCTGTGACGTTTTCCCAAGGTTTCTTACATTTGATTCGTATTGGTCATAA
Protein sequenceShow/hide protein sequence
MSRTPFSRRDVESGPPTVSSICIVSIISHSIFGAHMPRTSTHTPCMLSDTFCYGIGREASSLEGELRCDPQWSKRWLTLPTSGKRSLGVRNHWKCTCSKGNGLSSRTSGV
RPKKMQAIMPQTHFSHHGVKSSPSDGFFPFHRIGHKSFDLRGSYFKDSNRNSWHAPCDVFPRFLTFDSYWS