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IVF0004467 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004467
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRRM domain-containing protein
Genome locationchr09:23233983..23234300
RNA-Seq ExpressionIVF0004467
SyntenyIVF0004467
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33783.1 hypothetical protein [Cucumis melo subsp. melo]2.42e-63100Show/hide
Query:  MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS
        MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS
Subjt:  MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS

Query:  FLKTS
        FLKTS
Subjt:  FLKTS

KAA0042597.1 putative RNA-binding protein 18 [Cucumis melo var. makuwa]9.42e-6199.04Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
        +EAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF

Query:  LKTS
        LKTS
Subjt:  LKTS

XP_008437528.1 PREDICTED: probable RNA-binding protein 18 [Cucumis melo]3.39e-6199.04Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
        +EAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF

Query:  LKTS
        LKTS
Subjt:  LKTS

XP_011654647.1 probable RNA-binding protein 18 isoform X2 [Cucumis sativus]2.93e-5591.35Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
        +EAKLAKEKMHGKLACGRPLVVRLASEKLM NT NDTS+ ASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNIS+KDH DKS 
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF

Query:  LKTS
        LK S
Subjt:  LKTS

XP_031741097.1 probable RNA-binding protein 18 isoform X1 [Cucumis sativus]3.90e-5692.38Show/hide
Query:  MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS
        MQEAKLAKEKMHGKLACGRPLVVRLASEKLM NT NDTS+ ASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNIS+KDH DKS
Subjt:  MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS

Query:  FLKTS
         LK S
Subjt:  FLKTS

TrEMBL top hitse value%identityAlignment
A0A0A0KJM9 RRM domain-containing protein9.6e-4291.35Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
        +EAKLAKEKMHGKLACGRPLVVRLASEKLM NT NDTS+ ASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNIS+KDH DKS 
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF

Query:  LKTS
        LK S
Subjt:  LKTS

A0A1S3ATX2 probable RNA-binding protein 182.9e-4699.04Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
        +EAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF

Query:  LKTS
        LKTS
Subjt:  LKTS

A0A5A7TLJ6 Putative RNA-binding protein 182.9e-4699.04Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
        +EAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSF

Query:  LKTS
        LKTS
Subjt:  LKTS

A0A6J1DUC5 probable RNA-binding protein 18 isoform X13.4e-3177.36Show/hide
Query:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQDNISFKDHIDK
        +EAKLAKEKMHGKLACGRPLVVRLASEK M++T    S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQDNIS +D+IDK
Subjt:  QEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQDNISFKDHIDK

Query:  SFLKTS
          LKTS
Subjt:  SFLKTS

E5GBC9 Uncharacterized protein3.4e-47100Show/hide
Query:  MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS
        MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS
Subjt:  MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKS

Query:  FLKTS
        FLKTS
Subjt:  FLKTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52545.1 unknown protein1.2e-1254.43Show/hide
Query:  MHGKLACGRPLVVRLASEKLMVNTANDTSK-AASESRKSR-LGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPK
        MHG+LACGRPLVVRLASEK + ++++D SK +  E  ++R + GSS GQ++R +K+ AIKNKL+ALE   E    KK K
Subjt:  MHGKLACGRPLVVRLASEKLMVNTANDTSK-AASESRKSR-LGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGCGGTCGTCCGTTGGTCGTCCGCCTCGCTAGTGAAAAGCTCATGGTGAACACAGCAAATGA
TACTTCAAAAGCAGCAAGCGAGTCAAGAAAATCAAGACTCGGTGGCAGCAGTTATGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTT
TGGAAGGAGGTGGGGAGAGCTCCAGTGTGAAAAAACCGAAGCAAGATAATATCAGTTTCAAGGATCATATTGATAAGTCATTTCTCAAGACATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGGAAATTAGCTTGCGGTCGTCCGTTGGTCGTCCGCCTCGCTAGTGAAAAGCTCATGGTGAACACAGCAAATGA
TACTTCAAAAGCAGCAAGCGAGTCAAGAAAATCAAGACTCGGTGGCAGCAGTTATGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTT
TGGAAGGAGGTGGGGAGAGCTCCAGTGTGAAAAAACCGAAGCAAGATAATATCAGTTTCAAGGATCATATTGATAAGTCATTTCTCAAGACATCTTGA
Protein sequenceShow/hide protein sequence
MQEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS