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IVF0004487 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004487
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr02:18158309..18158898
RNA-Seq ExpressionIVF0004487
SyntenyIVF0004487
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008234 - cysteine-type peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]3.35e-3274.71Show/hide
Query:  LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT
        L IF A T RTSTHTSG LP  F QGIGR A SLEGEL  DPKR KRWPML T GERLSGV NHWKC CS  NRLSSRTS V P KT
Subjt:  LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]7.39e-5657.53Show/hide
Query:  PDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWA-----------------------HL
        PD F   + REASSLE EL C+ KRSKRWPM PT+GE SS VRNHWK +C EG GL+SR  G  PKKTRARMP +                       +L
Subjt:  PDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWA-----------------------HL

Query:  LIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT
         IF A TPRTSTHT+G LP  F +GIG+ A SLEGEL C+PKRSKRW MLPT  ER SG+ NH KC   E N LSSRT    PKKT
Subjt:  LIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]4.70e-3379.22Show/hide
Query:  PGMLPDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMP
        PGMLPDTFS GIGREASSLEGEL C+PKRSKRWP LPTSGE SS VRNHWK +C EG GLSSR  G  PKKT A MP
Subjt:  PGMLPDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMP

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]3.48e-4845.96Show/hide
Query:  IGREASS--LEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWAH-----------------------LLIFGA
        IG ++ S  + G      K  +RWPMLPTSGE SS VRN WK +CIEG GLSSR  G  PKKTRARMP                          L IFGA
Subjt:  IGREASS--LEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWAH-----------------------LLIFGA

Query:  ------------------------------------------------------HTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLP
                                                               TPRTSTHTSG LP TF  GIGR A SLEGEL CDPK SKRWPMLP
Subjt:  ------------------------------------------------------HTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLP

Query:  TCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT
        T GER SG  NHWKC CSE N LSSRTS  RP+KT
Subjt:  TCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]5.94e-6354.42Show/hide
Query:  TSTHTPGMLPDTFSEGIGREASSLEGELRCN--------------------------------PKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSR
        T THTPGMLPDTFS+GIGREASSLEGEL+CN                                PK SKRWPMLPTSGE SS VRNHWK +C EG  LSSR
Subjt:  TSTHTPGMLPDTFSEGIGREASSLEGELRCN--------------------------------PKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSR

Query:  NFGVHPKKTRARMP---WAH-------------------LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGV
         FG  PKKT AR P   ++H                   LL+FGA  P  STHT   L  T   GIGR A SLE EL CDPKRSK W ML T G R S V
Subjt:  NFGVHPKKTRARMP---WAH-------------------LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGV

Query:  INHWKCNCSERNRLSSRTSDVRPKKT
         NHWKC C+ERN+L SRTS VRP+KT
Subjt:  INHWKCNCSERNRLSSRTSDVRPKKT

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein1.2e-2574.71Show/hide
Query:  LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT
        L IF A T RTSTHTSG LP  F QGIGR A SLEGEL  DPKR KRWPML T GERLSGV NHWKC CS  NRLSSRTS V P KT
Subjt:  LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.5e-4757.53Show/hide
Query:  PDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWA-----------------------HL
        PD F   + REASSLE EL C+ KRSKRWPM PT+GE SS VRNHWK +C EG GL+SR  G  PKKTRARMP +                       +L
Subjt:  PDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWA-----------------------HL

Query:  LIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT
         IF A TPRTSTHT+G LP  F +GIG+ A SLEGEL C+PKRSKRW MLPT  ER SG+ NH KC   E N LSSRT    PKKT
Subjt:  LIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 407.1e-2679.22Show/hide
Query:  PGMLPDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMP
        PGMLPDTFS GIGREASSLEGEL C+PKRSKRWP LPTSGE SS VRNHWK +C EG GLSSR  G  PKKT A MP
Subjt:  PGMLPDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMP

A0A5D3DFP2 Uncharacterized protein5.1e-4045.96Show/hide
Query:  IGREASS--LEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWAH-----------------------LLIFGA
        IG ++ S  + G      K  +RWPMLPTSGE SS VRN WK +CIEG GLSSR  G  PKKTRARMP                          L IFGA
Subjt:  IGREASS--LEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWAH-----------------------LLIFGA

Query:  ------------------------------------------------------HTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLP
                                                               TPRTSTHTSG LP TF  GIGR A SLEGEL CDPK SKRWPMLP
Subjt:  ------------------------------------------------------HTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLP

Query:  TCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT
        T GER SG  NHWKC CSE N LSSRTS  RP+KT
Subjt:  TCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT

A0A5D3DIF8 Gag/pol protein2.6e-5254.42Show/hide
Query:  TSTHTPGMLPDTFSEGIGREASSLEGELRCN--------------------------------PKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSR
        T THTPGMLPDTFS+GIGREASSLEGEL+CN                                PK SKRWPMLPTSGE SS VRNHWK +C EG  LSSR
Subjt:  TSTHTPGMLPDTFSEGIGREASSLEGELRCN--------------------------------PKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSR

Query:  NFGVHPKKTRARMP---WAH-------------------LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGV
         FG  PKKT AR P   ++H                   LL+FGA  P  STHT   L  T   GIGR A SLE EL CDPKRSK W ML T G R S V
Subjt:  NFGVHPKKTRARMP---WAH-------------------LLIFGAHTPRTSTHTSGKLPVTFFQGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGV

Query:  INHWKCNCSERNRLSSRTSDVRPKKT
         NHWKC C+ERN+L SRTS VRP+KT
Subjt:  INHWKCNCSERNRLSSRTSDVRPKKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCAACCCATACTCCTGGCATGCTCCCTGACACGTTTTCAGAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACGGTCCAA
AAGATGGCCAATGCTTCCAACGAGTGGTGAACCCTCGTCCTGTGTCAGAAACCACTGGAAATTTAGTTGCATCGAAGGAAAAGGGCTGAGCTCGAGGAATTTCGGTGTTC
ATCCCAAGAAAACGCGAGCGAGAATGCCCTGGGCTCATCTTTTGATCTTCGGAGCACATACTCCAAGGACTTCAACCCATACTTCTGGCAAGCTCCCTGTCACGTTTTTC
CAAGGTATAGGTCGGGCAGCGATCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACGTTCCAAAAGATGGCCAATGCTTCCAACGTGTGGCGAACGCTTGTCCGGTGT
CATAAACCACTGGAAATGCAATTGCAGCGAAAGAAACAGGCTGAGCTCAAGGACTTCCGATGTTCGTCCCAAGAAAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCAACCCATACTCCTGGCATGCTCCCTGACACGTTTTCAGAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCAAAACGGTCCAA
AAGATGGCCAATGCTTCCAACGAGTGGTGAACCCTCGTCCTGTGTCAGAAACCACTGGAAATTTAGTTGCATCGAAGGAAAAGGGCTGAGCTCGAGGAATTTCGGTGTTC
ATCCCAAGAAAACGCGAGCGAGAATGCCCTGGGCTCATCTTTTGATCTTCGGAGCACATACTCCAAGGACTTCAACCCATACTTCTGGCAAGCTCCCTGTCACGTTTTTC
CAAGGTATAGGTCGGGCAGCGATCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACGTTCCAAAAGATGGCCAATGCTTCCAACGTGTGGCGAACGCTTGTCCGGTGT
CATAAACCACTGGAAATGCAATTGCAGCGAAAGAAACAGGCTGAGCTCAAGGACTTCCGATGTTCGTCCCAAGAAAACGTGA
Protein sequenceShow/hide protein sequence
MTSTHTPGMLPDTFSEGIGREASSLEGELRCNPKRSKRWPMLPTSGEPSSCVRNHWKFSCIEGKGLSSRNFGVHPKKTRARMPWAHLLIFGAHTPRTSTHTSGKLPVTFF
QGIGRAAISLEGELRCDPKRSKRWPMLPTCGERLSGVINHWKCNCSERNRLSSRTSDVRPKKT