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IVF0004527 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004527
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:8453405..8453643
RNA-Seq ExpressionIVF0004527
SyntenyIVF0004527
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038163.1 retrotransposon protein [Cucumis melo var. makuwa]7.51e-2295.56Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPTKKT
        MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT  T
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPTKKT

KAA0056667.1 retrotransposon protein [Cucumis melo var. makuwa]4.00e-3072.15Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN
        MG QT R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT             KKTVIF+GPHGHISRKY RNFQ N
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]1.65e-1585.71Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT
        MGLQ  R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]1.61e-1585.71Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT
        MGLQ  R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.73e-2972.15Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN
        MG QT R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT             KKTVIF+GPHGHISRKY RNFQ N
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN

TrEMBL top hitse value%identityAlignment
A0A0A0LY11 Uncharacterized protein4.8e-1559.49Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN
        MG  + +  E+DDMDINLEDFDIPN HGLEP S EDM ST T             KKT+IF+GPH HIS KY RNFQ N
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN

A0A1S3CI24 uncharacterized protein At2g29880-like4.1e-2272.15Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN
        MG QT R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT             KKTVIF+GPHGHISRKY RNFQ N
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN

A0A5A7T590 Retrotransposon protein7.4e-1695.56Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPTKKT
        MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT  T
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPTKKT

A0A5A7VGQ0 Retrotransposon protein1.4e-1185.71Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT
        MGLQ  R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT

A0A5D3C2H8 Retrotransposon protein4.1e-2272.15Show/hide
Query:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN
        MG QT R+TE+DDMDINLEDFDIPNPHGLEP SGEDM STPT             KKTVIF+GPHGHISRKY RNFQ N
Subjt:  MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPT-------------KKTVIFKGPHGHISRKYMRNFQRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTACAGACTACAAGAAATACTGAGAAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACTTTCGGGGGAGGACAT
GCTATCCACTCCAACAAAAAAGACGGTCATATTCAAGGGACCTCATGGACACATTTCGCGCAAGTATATGAGAAACTTCCAAAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTACAGACTACAAGAAATACTGAGAAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACTTTCGGGGGAGGACAT
GCTATCCACTCCAACAAAAAAGACGGTCATATTCAAGGGACCTCATGGACACATTTCGCGCAAGTATATGAGAAACTTCCAAAGAAATTGA
Protein sequenceShow/hide protein sequence
MGLQTTRNTEKDDMDINLEDFDIPNPHGLEPLSGEDMLSTPTKKTVIFKGPHGHISRKYMRNFQRN