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IVF0004559 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004559
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:5732164..5732407
RNA-Seq ExpressionIVF0004559
SyntenyIVF0004559
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051827.1 retrotransposon protein [Cucumis melo var. makuwa]1.60e-0775Show/hide
Query:  TTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS
        TTMNNLT LL  +SYNVK Q QH KRS D+YRPSLS
Subjt:  TTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS

KAA0065970.1 retrotransposon protein [Cucumis melo var. makuwa]3.74e-1053.73Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS
        M PNE+MGTRT RVS+ R+V SG K KRGG   +++   + T++ Y VK Q +H KR FD++RPSLS
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS

KAA0066105.1 retrotransposon protein [Cucumis melo var. makuwa]5.36e-1152.56Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCT-------------TMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPS
        M P+EVMGT+T R SD R+VSS  K KRGG +              +NNLT LLT  SYN K Q Q  KRSFD+YR S
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCT-------------TMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPS

TYK19873.1 retrotransposon protein [Cucumis melo var. makuwa]1.79e-0570Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGG
        M P+E++GTRTTRVS+ R++SSG KWKRGG
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGG

TYK30259.1 retrotransposon protein [Cucumis melo var. makuwa]1.12e-0953.73Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS
        M PNE+MGTRT RVS+ R+V SG K KRGG   +++   + T++ Y VK Q +H KR FD++RPSLS
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS

TrEMBL top hitse value%identityAlignment
A0A5A7VFI4 Retrotransposon protein2.9e-0753.73Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS
        M PNE+MGTRT RVS+ R+V SG K KRGG   +++   + T++ Y VK Q +H KR FD++RPSLS
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS

A0A5D3CW35 Retrotransposon protein2.9e-0752.56Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCT-------------TMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPS
        M P+EVMGT+T R SD R+VSS  K KRGG +              +NNLT LLT  SYN K Q Q  KRSFD+YR S
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCT-------------TMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPS

A0A5D3DCN7 Retrotransposon protein1.0e-0475Show/hide
Query:  TTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS
        TTMNNLT LL  +SYNVK Q QH KRS D+YRPSLS
Subjt:  TTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS

A0A5D3E392 Retrotransposon protein2.9e-0753.73Show/hide
Query:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS
        M PNE+MGTRT RVS+ R+V SG K KRGG   +++   + T++ Y VK Q +H KR FD++RPSLS
Subjt:  MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCTAACGAAGTAATGGGAACAAGAACCACTCGGGTAAGTGACGATAGACATGTTTCTAGTGGGTTTAAGTGGAAACGGGGAGGATGTACAACAATGAACAACTT
AACCACATTGCTGACTAGCATGTCCTACAACGTCAAGATGCAAACACAACACGACAAGAGGTCATTTGACAATTATAGACCATCCCTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCTAACGAAGTAATGGGAACAAGAACCACTCGGGTAAGTGACGATAGACATGTTTCTAGTGGGTTTAAGTGGAAACGGGGAGGATGTACAACAATGAACAACTT
AACCACATTGCTGACTAGCATGTCCTACAACGTCAAGATGCAAACACAACACGACAAGAGGTCATTTGACAATTATAGACCATCCCTGAGCTGA
Protein sequenceShow/hide protein sequence
MLPNEVMGTRTTRVSDDRHVSSGFKWKRGGCTTMNNLTTLLTSMSYNVKMQTQHDKRSFDNYRPSLS