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IVF0004570 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004570
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:18801614..18802227
RNA-Seq ExpressionIVF0004570
SyntenyIVF0004570
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]5.33e-4560.27Show/hide
Query:  VLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRTF--------------D
        VLVISLSIF ART R  +HT+ ML   F++G+GREASSLEGEL  DPKR KRWP+L  SGER  GVRNHWK TCS   RLSSRT                
Subjt:  VLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRTF--------------D

Query:  FSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTF
        FS PR KS  P VSSLC V+ ISLSIFGA TPRTS  T  +L++ F
Subjt:  FSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTF

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.47e-5351.74Show/hide
Query:  KSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEG-------------------------------------------------LGREASSL
        KS  PTVSSLC VLVISLSIFGART R  +HT+ ML DTFS                                                   L REASSL
Subjt:  KSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEG-------------------------------------------------LGREASSL

Query:  EGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRTF--------------DFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTL
        E EL CD KRSKRWP+   +GERS GVRNHWK TCSEG  L+SRT                FS    KS  PTVSSLCFV+ I+LSIF ARTPRTST+T 
Subjt:  EGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRTF--------------DFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTL

Query:  GMLSDTFSQGIGQEGRSLEGELRCDLKRSK
        GML D FS+GIGQE  SLEGEL C+ KRSK
Subjt:  GMLSDTFSQGIGQEGRSLEGELRCDLKRSK

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]2.13e-3668.63Show/hide
Query:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR
        R S QEN S+NA DSVFSSW KS  PTVSS+C VLVI LSIFGA  PR  +HT  ML D FS G+ REA SLEGEL CDPKRS+RWP+L  SG+RS  VR
Subjt:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR

Query:  NH
        NH
Subjt:  NH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.12e-2938.28Show/hide
Query:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR
        R S QEN SENAPDS FSSWGK   P                G      + H +       SE +G       G      K  +RWP+L  SGERS GVR
Subjt:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR

Query:  NHWKYTCSEGYRLSSRTF--------------DFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQ-------------------
        N WK TC EG  LSSRT                FS P  KS  PTVS+LC V+  SLSIFGA TPRTST+T GML DTFS+                   
Subjt:  NHWKYTCSEGYRLSSRTF--------------DFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQ-------------------

Query:  -----------------------------------GIGQEGRSLEGELRCDLKRSK
                                           GIG+E  SLEGEL CD K SK
Subjt:  -----------------------------------GIGQEGRSLEGELRCDLKRSK

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]1.48e-5258.62Show/hide
Query:  DSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRL
        DSVFSSW K+   TVSSL F+LVISL IFGA TPR  +HT  ML D FS+G+GREASSLEGELRCDPK  KRWP+L  SGE S GVRN+WK TCSE  RL
Subjt:  DSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRL

Query:  SSRTFDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRS
         SRT +    +  + +P                    PRT T+T GML DTFSQGIG+E  SLEGEL+C+ KRS
Subjt:  SSRTFDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRS

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein6.0e-3460.27Show/hide
Query:  VLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRT--------------FD
        VLVISLSIF ART R  +HT+ ML   F++G+GREASSLEGEL  DPKR KRWP+L  SGER  GVRNHWK TCS   RLSSRT                
Subjt:  VLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRT--------------FD

Query:  FSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTF
        FS PR KS  P VSSLC V+ ISLSIFGA TPRTS  T  +L++ F
Subjt:  FSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTF

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.2e-4451.25Show/hide
Query:  PDSVFSSWG-KSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFS-------------------------------------------------
        P + FS  G KS  PTVSSLC VLVISLSIFGART R  +HT+ ML DTFS                                                 
Subjt:  PDSVFSSWG-KSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFS-------------------------------------------------

Query:  EGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRT--------------FDFSHPRVKSGLPTVSSLCFVIFISLSIFGA
          L REASSLE EL CD KRSKRWP+   +GERS GVRNHWK TCSEG  L+SRT                FS    KS  PTVSSLCFV+ I+LSIF A
Subjt:  EGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSEGYRLSSRT--------------FDFSHPRVKSGLPTVSSLCFVIFISLSIFGA

Query:  RTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRSK
        RTPRTST+T GML D FS+GIGQE  SLEGEL C+ KRSK
Subjt:  RTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRSK

A0A5D3CZ27 ULP_PROTEASE domain-containing protein4.9e-2868.63Show/hide
Query:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR
        R S QEN S+NA DSVFSSW KS  PTVSS+C VLVI LSIFGA  PR  +HT  ML D FS G+ REA SLEGEL CDPKRS+RWP+L  SG+RS  VR
Subjt:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR

Query:  NH
        NH
Subjt:  NH

A0A5D3DFP2 Uncharacterized protein3.3e-2438.28Show/hide
Query:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR
        R S QEN SENAPDS FSSWGK   P                G      + H +       SE +G       G      K  +RWP+L  SGERS GVR
Subjt:  RSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVR

Query:  NHWKYTCSEGYRLSSRT--------------FDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQ-------------------
        N WK TC EG  LSSRT                FS P  KS  PTVS+LC V+  SLSIFGA TPRTST+T GML DTFS+                   
Subjt:  NHWKYTCSEGYRLSSRT--------------FDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQ-------------------

Query:  -----------------------------------GIGQEGRSLEGELRCDLKRSK
                                           GIG+E  SLEGEL CD K SK
Subjt:  -----------------------------------GIGQEGRSLEGELRCDLKRSK

A0A5D3DIF8 Gag/pol protein5.4e-4355.91Show/hide
Query:  SSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRN
        SS          DSVFSSW K+   TVSSL F+LVISL IFGA TPR  +HT  ML D FS+G+GREASSLEGELRCDPK  KRWP+L  SGE S GVRN
Subjt:  SSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRN

Query:  HWKYTCSEGYRLSSRTFDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRS
        +WK TCSE  RL SRT +    +  + +P                    PRT T+T GML DTFSQGIG+E  SLEGEL+C+ KRS
Subjt:  HWKYTCSEGYRLSSRTFDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTCTTCGTACCAAGAAAATGCGAGTGAGAATGCCCCAGACTCAGTTTTCTCGTCTTGGGGAAAAAGCAATCTCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGT
CATAAGTCTTTCGATCTTCGGGGCTCGTACTCCCAGGATTTTGTCCCACACTGCTAGCATGCTCTCAGACACGTTTTCCGAAGGTTTAGGACGGGAAGCGAGCTCATTGG
AGGGAGAACTAAGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATACTGACAATGAGTGGCGAACGCTCGTTCGGTGTAAGAAACCATTGGAAATACACTTGCAGTGAA
GGATACAGGCTAAGCTCGAGGACTTTTGATTTTTCTCATCCTCGGGTAAAAAGCGGTCTCCCGACGGTTTCTTCCCTTTGTTTTGTAATATTCATCAGTCTTTCGATCTT
TGGGGCTCGTACTCCAAGGACTTCAACCAACACTCTTGGCATGCTCTCTGACACATTTTCCCAAGGTATAGGTCAGGAAGGTAGGTCGTTGGAGGGAGAACTAAGATGCG
ATCTAAAACGGTCTAAAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTCTTCGTACCAAGAAAATGCGAGTGAGAATGCCCCAGACTCAGTTTTCTCGTCTTGGGGAAAAAGCAATCTCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGT
CATAAGTCTTTCGATCTTCGGGGCTCGTACTCCCAGGATTTTGTCCCACACTGCTAGCATGCTCTCAGACACGTTTTCCGAAGGTTTAGGACGGGAAGCGAGCTCATTGG
AGGGAGAACTAAGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATACTGACAATGAGTGGCGAACGCTCGTTCGGTGTAAGAAACCATTGGAAATACACTTGCAGTGAA
GGATACAGGCTAAGCTCGAGGACTTTTGATTTTTCTCATCCTCGGGTAAAAAGCGGTCTCCCGACGGTTTCTTCCCTTTGTTTTGTAATATTCATCAGTCTTTCGATCTT
TGGGGCTCGTACTCCAAGGACTTCAACCAACACTCTTGGCATGCTCTCTGACACATTTTCCCAAGGTATAGGTCAGGAAGGTAGGTCGTTGGAGGGAGAACTAAGATGCG
ATCTAAAACGGTCTAAAATATGA
Protein sequenceShow/hide protein sequence
MRSSYQENASENAPDSVFSSWGKSNLPTVSSLCFVLVISLSIFGARTPRILSHTASMLSDTFSEGLGREASSLEGELRCDPKRSKRWPILTMSGERSFGVRNHWKYTCSE
GYRLSSRTFDFSHPRVKSGLPTVSSLCFVIFISLSIFGARTPRTSTNTLGMLSDTFSQGIGQEGRSLEGELRCDLKRSKI