; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0004619 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004619
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr05:12163442..12163924
RNA-Seq ExpressionIVF0004619
SyntenyIVF0004619
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]2.02e-2347.93Show/hide
Query:  LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------
        +FR R +ENLND W I K LVKAC H+GI +CVLME FYFRLSED Q          +L++SYNQ KTMLD M +N+++ +DD   S+QE          
Subjt:  LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------

Query:  ------------QVNEMNKLL
                    QV EMNKLL
Subjt:  ------------QVNEMNKLL

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]8.96e-3145.86Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER--------
        M F QR +ENL D+W  FK ++K CPH+ I ECVLME FYF LS++T           ML+SSYNQIK MLD MA+N+++W+D+ FGSR +         
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER--------

Query:  ----------------QVNEMNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP
                        QV EMN +L+SMAL QVN   +S+  V QV+EMGCV    P
Subjt:  ----------------QVNEMNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]3.40e-1940.6Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKL
        +LF+QR ++NL+D W IFK +VKAC H+GI + VLMEGFYF LS+DT+          +L+SSYNQIK MLD+MANN                       
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKL

Query:  LKSMALSQVNAASNSIHAVNQVDEMGCVDAADP
                   + +S HAV  V+EM C     P
Subjt:  LKSMALSQVNAASNSIHAVNQVDEMGCVDAADP

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]3.31e-3650Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----
        M+F+QR KEN++D W  FK LVKACP +GI ECV ME FYF LS+DT           ML+SSYNQIK  LD+M+NN+++W D GFGSR   +  E    
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----

Query:  ------------MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH
                    MN LL+SM LSQVNAA+N IHAV QV++    D A  T   H
Subjt:  ------------MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]7.95e-2043.65Show/hide
Query:  LVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER------------------------QVNE
        ++K C H+ IL CV++E FYF LS DTQ          ML+ S N IKT LDAM +N+++W+D+ FGS  E                         QV E
Subjt:  LVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER------------------------QVNE

Query:  MNKLLKSMALSQVNAASNSIHAVNQV
        MNKLL+SMALSQ+NA  +SI  V+QV
Subjt:  MNKLLKSMALSQVNAASNSIHAVNQV

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein1.1e-2650Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----
        M+F+QR KEN++D W  FK LVKACP +GI ECV ME FYF LS+DT           ML+SSYNQIK  LD+M+NN+++W D GFGSR   +  E    
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNE----

Query:  ------------MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH
                    MN LL+SM LSQVNAA+N IHAV QV++    D A  T   H
Subjt:  ------------MNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADPTPPTH

A0A5A7TUE1 Uncharacterized protein2.1e-1747.93Show/hide
Query:  LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------
        +FR R +ENLND W I K LVKAC H+GI +CVLME FYFRLSED Q          +L++SYNQ KTMLD M +N+++ +DD   S+QE          
Subjt:  LFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER---------

Query:  ------------QVNEMNKLL
                    QV EMNKLL
Subjt:  ------------QVNEMNKLL

A0A5A7V1F3 Retrotrans_gag domain-containing protein4.3e-1540.6Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKL
        +LF+QR ++NL+D W IFK +VKAC H+GI + VLMEGFYF LS+DT+          +L+SSYNQIK MLD+MANN++                     
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKL

Query:  LKSMALSQVNAASNSIHAVNQVDEMGCVDAADP
                     +S HAV  V+EM C     P
Subjt:  LKSMALSQVNAASNSIHAVNQVDEMGCVDAADP

A0A5D3CC26 Uncharacterized protein2.3e-2445.86Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDT----------QMLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER--------
        M F QR +ENL D+W  FK ++K CPH+ I ECVLME FYF LS++T           ML+SSYNQIK MLD MA+N+++W+D+ FGSR +         
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDT----------QMLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQER--------

Query:  ----------------QVNEMNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP
                        QV EMN +L+SMAL QVN   +S+  V QV+EMGCV    P
Subjt:  ----------------QVNEMNKLLKSMALSQVNAASNSIHAVNQVDEMGCVDAADP

A0A5D3DR17 Retrotransposon gag protein2.1e-1452.81Show/hide
Query:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSR
        MLF+QR  ENL+D W  FK ++K C   GI E VLME FYF+LS+DTQ          ML+S YNQIK+ML++MA N+++W D  F SR
Subjt:  MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQ----------MLQSSYNQIKTMLDAMANNNKKWKDDGFGSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGA
GGGCTTTTATTTTCGGCTAAGTGAGGATACACAAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATG
ATGGCTTTGGCTCACGACAAGAAAGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAAT
CAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTTCAGACAGAGAGCTAAAGAGAATTTGAATGACATGTGGCACATATTCAAATGTTTGGTGAAAGCATGCCCCCATAATGGCATACTTGAATGCGTACTAATGGA
GGGCTTTTATTTTCGGCTAAGTGAGGATACACAAATGTTACAAAGTTCCTACAACCAGATTAAAACAATGTTGGATGCTATGGCCAACAATAATAAAAAATGGAAAGATG
ATGGCTTTGGCTCACGACAAGAAAGACAAGTTAATGAAATGAACAAGTTGCTCAAGTCTATGGCGTTATCACAAGTAAATGCTGCGAGCAACTCTATTCATGCAGTAAAT
CAGGTTGATGAGATGGGATGTGTGGATGCTGCGGACCCTACACCACCAACGCATGTCTGCTTAACATAG
Protein sequenceShow/hide protein sequence
MLFRQRAKENLNDMWHIFKCLVKACPHNGILECVLMEGFYFRLSEDTQMLQSSYNQIKTMLDAMANNNKKWKDDGFGSRQERQVNEMNKLLKSMALSQVNAASNSIHAVN
QVDEMGCVDAADPTPPTHVCLT