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IVF0004681 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004681
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:21043135..21043353
RNA-Seq ExpressionIVF0004681
SyntenyIVF0004681
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047431.1 retrotransposon protein [Cucumis melo var. makuwa]4.80e-1670.59Show/hide
Query:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
        MR LTCRMETR+F PC A G TC R MYAHHD  A Q VGPDR NPR  GE
Subjt:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
KAA0055605.1 retrotransposon protein [Cucumis melo var. makuwa]6.57e-3195Show/hide
Query:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLAL
        MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRM  L L
Subjt:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLAL
KAA0066432.1 retrotransposon protein [Cucumis melo var. makuwa]7.11e-1970.69Show/hide
Query:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSL
        MR LTCRM TRSF PC A+G TCPR MY HHDLLARQT+GPDR   RE+GE    VSL
Subjt:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSL
KAA0068169.1 retrotransposon protein [Cucumis melo var. makuwa]4.25e-1571.43Show/hide
Query:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
        GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Subjt:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
TYK21089.1 retrotransposon protein [Cucumis melo var. makuwa]4.25e-1571.43Show/hide
Query:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
        GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Subjt:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
TrEMBL top hitse value%identityAlignment
A0A5A7UPU1 Retrotransposon protein1.9e-2595Show/hide
Query:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLAL
        MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRM  L L
Subjt:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLAL
A0A5A7VDL9 Retrotransposon protein4.4e-1470.69Show/hide
Query:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSL
        MR LTCRM TRSF PC A+G TCPR MY HHDLLARQT+GPDR   RE+GE    VSL
Subjt:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSL
A0A5A7VSX7 Retrotransposon protein9.3e-1271.43Show/hide
Query:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
        GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Subjt:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
A0A5D3C195 Retrotransposon protein1.4e-1270.59Show/hide
Query:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
        MR LTCRMETR+F PC A G TC R MYAHHD  A Q VGPDR NPR  GE
Subjt:  MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
A0A5D3DCS9 Retrotransposon protein9.3e-1271.43Show/hide
Query:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
        GLTC M TRS  PC A+G TCPR MYAHHDLL RQ VGPD+A+ REKG+
Subjt:  GLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGTTTGACATGCCGAATGGAAACGAGGAGTTTCGATCCATGTATAGCCAAGGGATTTACATGTCCTAGGATGATGTACGCACATCACGATCTGCTCGCACGTCA
GACGGTAGGCCCGGATCGAGCTAATCCAAGAGAAAAAGGGGAAACCATCAGAATGGTGAGCTTGGCCCTAGAGTGTATGAATGACCAATTCAAAACGATTGTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGTTTGACATGCCGAATGGAAACGAGGAGTTTCGATCCATGTATAGCCAAGGGATTTACATGTCCTAGGATGATGTACGCACATCACGATCTGCTCGCACGTCA
GACGGTAGGCCCGGATCGAGCTAATCCAAGAGAAAAAGGGGAAACCATCAGAATGGTGAGCTTGGCCCTAGAGTGTATGAATGACCAATTCAAAACGATTGTTGAGTAG
Protein sequenceShow/hide protein sequence
MRGLTCRMETRSFDPCIAKGFTCPRMMYAHHDLLARQTVGPDRANPREKGETIRMVSLALECMNDQFKTIVE