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IVF0004752 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004752
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60S ribosomal protein L39
Genome locationchr04:16212602..16212757
RNA-Seq ExpressionIVF0004752
SyntenyIVF0004752
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABR17261.1 unknown [Picea sitchensis]4.94e-1266.67Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIKK        KLAKK+RQNRPI HWI +R DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

PON37200.1 Ribosomal protein [Trema orientale]3.96e-1268.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIKK        KLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

XP_002309322.1 60S ribosomal protein L39 isoform X6 [Populus trichocarpa]4.94e-1266.67Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIKK        KLAKK+RQNRPI HWI +R DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

XP_004135586.1 60S ribosomal protein L39 [Cucumis sativus]2.45e-1268.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIKK        KLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

XP_020246471.1 60S ribosomal protein L39-1-like [Asparagus officinalis]3.48e-1274.36Show/hide
Query:  QNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        ++F I KKLAKK+RQNRPI HWIC+R DNTI Y+AKRRH
Subjt:  QNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

TrEMBL top hitse value%identityAlignment
A0A0A0LYE1 Uncharacterized protein4.4e-0868.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

A0A1S3BCZ7 60S ribosomal protein L394.4e-0868.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

A0A6J1C1Z7 60S ribosomal protein L394.4e-0868.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

A0A6J1F9G6 60S ribosomal protein L394.4e-0868.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

A0A6J1HZ80 60S ribosomal protein L394.4e-0868.63Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-15.0e-0962.75Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HK+F IK        KKL KK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

P51425 60S ribosomal protein L391.0e-0964.71Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI +WI +R DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

P51426 60S ribosomal protein L39-21.0e-0964.71Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI +WI +R DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

Q5SMI4 60S ribosomal protein L39-32.9e-0962.75Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTF+IK        KKLAKK+RQNRPI +WI +R DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

Q6KAJ8 60S ribosomal protein L39-11.0e-0964.71Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HKTFRIK        KKLAKK+RQNRPI +WI +R DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein1.8e-0977.14Show/hide
Query:  IMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        I KKL KK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  IMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

AT3G02190.1 Ribosomal protein L39 family protein1.1e-0858.82Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HK+F IK        KKL KK+RQNRPI +WI LR DN I Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH

AT4G31985.1 Ribosomal protein L39 family protein3.6e-1062.75Show/hide
Query:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH
        M  HK+F IK        KKL KK+RQNRPI HWI LR DNTI Y+AKRRH
Subjt:  MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATATCACAAGACTTTTAGAATCAAGAAGACACAAAATTTTAGAATCATGAAGAAGCTTGCAAAGAAGATAAGGCAGAATAGGCCGATCACACACTGGATTTGCCT
GAGAAATGACAATACAATCATATATGACGCAAAACGCAGACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATATCACAAGACTTTTAGAATCAAGAAGACACAAAATTTTAGAATCATGAAGAAGCTTGCAAAGAAGATAAGGCAGAATAGGCCGATCACACACTGGATTTGCCT
GAGAAATGACAATACAATCATATATGACGCAAAACGCAGACACTAG
Protein sequenceShow/hide protein sequence
MSYHKTFRIKKTQNFRIMKKLAKKIRQNRPITHWICLRNDNTIIYDAKRRH