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IVF0004781 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004781
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:17089939..17090705
RNA-Seq ExpressionIVF0004781
SyntenyIVF0004781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032450.1 hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa]1.89e-6163.89Show/hide
Query:  MYCSREDLHLHLLPCVAVERIFIFIISNMLQPKRSSSQVYCSRE---------------------------------------------------SEKII
        MYCSREDLHLHLLPCVA ERIFIFIISNMLQPKRSSSQVYCSRE                                                   +EKII
Subjt:  MYCSREDLHLHLLPCVAVERIFIFIISNMLQPKRSSSQVYCSRE---------------------------------------------------SEKII

Query:  VSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        VSNMLQPRRSSSQICCSQKDFC +YI+AEKVVVSY+LQ RMSSS IC  RE RPLKYVAA+KI VLKYVAA+KIIVSNML
Subjt:  VSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.53e-4769.85Show/hide
Query:  LPCVAVERIFIFIISNMLQPKRSSSQVYCSRES-------------------EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSS
        L  + VE++   ++S +LQP+ SSSQ+ C RE                    EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ R+S S
Subjt:  LPCVAVERIFIFIISNMLQPKRSSSQVYCSRES-------------------EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSS

Query:  LICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        LICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Subjt:  LICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]1.03e-4766.43Show/hide
Query:  CSREDLHLHLLPCVAVERIFIF--------IISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML
        C RE      L  VA E+I +         I+SNMLQP+RSSSQ+ CS++        +EK++VS MLQPRRSSSQIC  QKDFCLKYIVAEKVVVSYML
Subjt:  CSREDLHLHLLPCVAVERIFIF--------IISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML

Query:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
          RMSSS ICC REGRPLKY+AAKKIVVLKYVAA+KIIVSNML
Subjt:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]7.28e-5169.23Show/hide
Query:  CSREDLHLHLLPCVAVERIFIF--------IISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML
        C RE   L     VA E+IF+         I+SNMLQP+RSSSQ+ CS++        +EK++VS MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SYML
Subjt:  CSREDLHLHLLPCVAVERIFIF--------IISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML

Query:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        Q RMSSS ICC REGRPLKYVAAKKIVVLKYVAA+KIIVSNML
Subjt:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

TYK18585.1 hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa]5.80e-5069.23Show/hide
Query:  CSREDLHLHLLPCVAVERIFIF--------IISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML
        C RE   L     VA E+IF+         I+SNMLQP+RSSSQ+ CS++        +EK++VS MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SYML
Subjt:  CSREDLHLHLLPCVAVERIFIF--------IISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML

Query:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        Q RMSSS ICC REGRPLKYVAAKKIVVLKYVAA+KIIVSNML
Subjt:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

TrEMBL top hitse value%identityAlignment
A0A5A7SNS6 Uncharacterized protein1.1e-4763.89Show/hide
Query:  MYCSREDLHLHLLPCVAVERIFIFIISNMLQPKRSSSQVYCSRE---------------------------------------------------SEKII
        MYCSREDLHLHLLPCVA ERIFIFIISNMLQPKRSSSQVYCSRE                                                   +EKII
Subjt:  MYCSREDLHLHLLPCVAVERIFIFIISNMLQPKRSSSQVYCSRE---------------------------------------------------SEKII

Query:  VSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        VSNMLQPRRSSSQICCSQKDFC +YI+AEKVVVSY+LQ RMSSS IC  RE RPLKYVAA+KI VLKYVAA+KIIVSNML
Subjt:  VSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5A7T146 Retrotransposon gag protein1.2e-3869.85Show/hide
Query:  LPCVAVERIFIFIISNMLQPKRSSSQVYCSRES-------------------EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSS
        L  + VE++   ++S +LQP+ SSSQ+ C RE                    EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQ R+S S
Subjt:  LPCVAVERIFIFIISNMLQPKRSSSQVYCSRES-------------------EKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSS

Query:  LICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        LICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
Subjt:  LICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5A7VE92 Uncharacterized protein1.3e-4069.23Show/hide
Query:  CSREDLHLHLLPCVAVERIFI--------FIISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML
        C RE   L     VA E+IF+         I+SNMLQP+RSSSQ+ CS++        +EK++VS MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SYML
Subjt:  CSREDLHLHLLPCVAVERIFI--------FIISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML

Query:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        Q RMSSS ICC REGRPLKYVAAKKIVVLKYVAA+KIIVSNML
Subjt:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

A0A5D3C2C8 Retrotransposon gag protein1.3e-3773.02Show/hide
Query:  LLPCVAVERIFIFIISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRP
        +L  VA E+I   I+SNMLQP+RSSSQ+ CS++        +EK++VS MLQPRRSSSQIC  QKDFCLKYIVAEKVVVSYML  RMSSS ICC REGRP
Subjt:  LLPCVAVERIFIFIISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRP

Query:  LKYVAAKKIVVLKYVAAKKIIVSNML
        LKY+AAKKIVVLKYVAA+KIIVSNML
Subjt:  LKYVAAKKIVVLKYVAAKKIIVSNML

A0A5D3D4V9 Uncharacterized protein1.3e-4069.23Show/hide
Query:  CSREDLHLHLLPCVAVERIFI--------FIISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML
        C RE   L     VA E+IF+         I+SNMLQP+RSSSQ+ CS++        +EK++VS MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SYML
Subjt:  CSREDLHLHLLPCVAVERIFI--------FIISNMLQPKRSSSQVYCSRE--------SEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYML

Query:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML
        Q RMSSS ICC REGRPLKYVAAKKIVVLKYVAA+KIIVSNML
Subjt:  QSRMSSSLICCHREGRPLKYVAAKKIVVLKYVAAKKIIVSNML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTGCAGCCGAGAGGATCTTCATCTTCATCTTCTCCCATGTGTTGCAGTCGAGAGGATCTTCATCTTCATCATCTCAAATATGTTGCAGCCAAAAAGATCTTCGTC
TCAAGTATATTGTAGCCGAGAATCAGAGAAAATCATCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGT
ATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGTCGAGGATGTCGTCGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAG
AAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATTGCAGCCGAGAGGATCTTCATCTTCATCTTCTCCCATGTGTTGCAGTCGAGAGGATCTTCATCTTCATCATCTCAAATATGTTGCAGCCAAAAAGATCTTCGTC
TCAAGTATATTGTAGCCGAGAATCAGAGAAAATCATCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGT
ATATTGTAGCCGAGAAAGTCGTCGTCTCATATATGTTGCAGTCGAGGATGTCGTCGTCTCTAATATGTTGCCACCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAG
AAGATCGTCGTTCTTAAATATGTTGCAGCAAAGAAGATCATCGTCTCAAATATGTTGTAG
Protein sequenceShow/hide protein sequence
MYCSREDLHLHLLPCVAVERIFIFIISNMLQPKRSSSQVYCSRESEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQSRMSSSLICCHREGRPLKYVAAK
KIVVLKYVAAKKIIVSNML