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IVF0004797 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004797
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic
Genome locationchr07:2661383..2664433
RNA-Seq ExpressionIVF0004797
SyntenyIVF0004797
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]1.57e-63100Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

XP_008452461.1 PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo]8.76e-64100Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]4.57e-5893.07Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P F LMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

XP_023535141.1 uncharacterized protein LOC111796655 isoform X2 [Cucurbita pepo subsp. pepo]7.82e-4879.21Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLL+FPLLQ H RPPSTL FP +KSHL VVSI+FPTSQFL  PSH P  FALMAK PK+D++EQK S+EGS+VESLPNGMFRVRLDNEDLILGYI 
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]1.04e-5490.1Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSST LLQFPLLQSHFRPPSTL FP VKSHLSVVSI+FPT+QFLH PSHA  GF LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein1.5e-4493.07Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P F LMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

A0A1S3BT96 translation initiation factor IF-1, chloroplastic1.0e-48100Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

A0A5A7V7J3 Translation initiation factor IF-11.0e-48100Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like1.1e-3679.21Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFP +KSH+SVVSI FP+SQFLH PSH P  F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

A0A6J1IP00 uncharacterized protein LOC1114769472.6e-3679.21Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS
        MSSTNLL+FPLL  H RPPSTL FP +KSHLSVVSI+FPTSQFL  PSH P  FALMAK PK+D++EQK S+EGS+VESLPNGMFRVRLDNEDLILGYI 
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYIS

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
A6MMP2 Translation initiation factor IF-1, chloroplastic1.8e-1085.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
        EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG

Q3BAK2 Translation initiation factor IF-1, chloroplastic3.0e-1088.57Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
        EQKL HEG + ESLPNGMFRVRLDNEDLILGYISG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG

Q7YJU4 Translation initiation factor IF-1, chloroplastic4.0e-1085.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
        EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG

Q94KR7 Translation initiation factor IF-1, chloroplastic2.7e-1165.62Show/hide
Query:  TSQFLHTPSHAPPGFALMAKS-PKNDTS-EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
        T  FL  P   P   AL A S  K D S EQK  HEG ++ESLPNGMFRVRLDNEDLILGYISG
Subjt:  TSQFLHTPSHAPPGFALMAKS-PKNDTS-EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG

Q95GN5 Translation initiation factor IF-1, chloroplastic1.8e-1085.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
        EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein3.0e-0558.54Show/hide
Query:  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG
        P+      K   EG V ESLPNGMFRV L+N D ILGYI G
Subjt:  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTC
TTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCACGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAG
GATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGATCGAGGTCAGAGGGAAGCAGGAGCTGG
CGAATTACGACGACGACAATATGGAGATCGATAGTGATTTCGAGAAGGAGTGTCCCGATGGGTTCGACAGTGATGACGACGATTTTTTTGACACCGACGAAATGGAGCCT
CAAGATGATGATGATGATGATGAGGAGGAGGAGTAGATTTGAATTGATATGTTTGATTGTTGCTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTC
TTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCACGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAG
GATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGATCGAGGTCAGAGGGAAGCAGGAGCTGG
CGAATTACGACGACGACAATATGGAGATCGATAGTGATTTCGAGAAGGAGTGTCCCGATGGGTTCGACAGTGATGACGACGATTTTTTTGACACCGACGAAATGGAGCCT
CAAGATGATGATGATGATGATGAGGAGGAGGAGTAGATTTGAATTGATATGTTTGATTGTTGCTGTTTGA
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGSRSEGSRSW
RITTTTIWRSIVISRRSVPMGSTVMTTIFLTPTKWSLKMMMMMMRRRSRFELICLIVAV