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IVF0004826 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004826
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr02:10873044..10873340
RNA-Seq ExpressionIVF0004826
SyntenyIVF0004826
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049584.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.28e-3273.42Show/hide
Query:  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFR
        MEN  YGAIVLNLSD+VL+E IGEE  Y MWKKLEELY+SKDL NRAY RERF T+KMDDNK L  +LGEFK+LS +F+
Subjt:  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFR

KAA0059755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.79e-4380.46Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFR
        MTQE+KETME  AYGAIVLNLSDNV++EVI EE  YGMWKKL+ELYQSKDL N AY+RERF T+KMDDN SLIENLGEFKKLS DF+
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFR

KAA0063883.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.03e-5086.17Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIG
        MT EEKETMEN  YGAIVLNLSDNVL+EVI E+TTYGMWKKLEELYQSKDLPNRAY+RERF T+KMD NKSL ENLGEFKKLS DFREL DKIG
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIG

TYJ96960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.17e-63100Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
        MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE

TYK28110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.45e-4582.95Show/hide
Query:  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDE
        MEN  YGAIVLNLSDNVL+EVIGEETTYGMWKKLEELYQ KDLPNRA++RERF T+KMDDNK +IENL EFKKLS +F+EL+DKIGDE
Subjt:  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDE

TrEMBL top hitse value%identityAlignment
A0A5A7V1L8 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-3180.46Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFR
        MTQE+KETME  AYGAIVLNLSDNV++EVI EE  YGMWKKL+ELYQSKDL N AY+RERF T+KMDDN SLIENLGEFKKLS DF+
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFR

A0A5A7V6Z9 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-3786.17Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIG
        MT EEKETMEN  YGAIVLNLSDNVL+EVI E+TTYGMWKKLEELYQSKDLPNRAY+RERF T+KMD NKSL ENLGEFKKLS DFREL DKIG
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIG

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-46100Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
        MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE

A0A5D3BSZ6 Putative gag protein2.5e-2358.16Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
        +T+E+ E ME+  YG IVL LSDNVL E+I +ETTY +W KLEE+Y ++DL NRAY+ E+F TY MD N+SL + L EFKKLS +F+ L D+I +ENE
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE

A0A5D3DXZ1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-3382.95Show/hide
Query:  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDE
        MEN  YGAIVLNLSDNVL+EVIGEETTYGMWKKLEELYQ KDLPNRA++RERF T+KMDDNK +IENL EFKKLS +F+EL+DKIGDE
Subjt:  MENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDE

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-0832.65Show/hide
Query:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE
        M  E+   ++  A  AI L+LSD+V+  +I E+T  G+W +LE LY SK L N+ Y++++     M +  + + +L  F  L      L  KI +E++
Subjt:  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGG
AATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAG
AGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCAAGAAGAAAAAGAAACTATGGAAAATGTAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAAGGAAGTCATTGGTGAAGAAACAACTTATGG
AATGTGGAAGAAATTGGAAGAACTCTATCAGTCCAAAGACTTACCAAACCGTGCATACATGAGGGAGAGGTTCCTTACCTACAAGATGGATGACAACAAATCTTTGATAG
AGAATCTTGGAGAATTCAAGAAGTTGTCTTTAGATTTCAGAGAATTGAAAGACAAGATTGGTGATGAAAATGAATAG
Protein sequenceShow/hide protein sequence
MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE