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IVF0004828 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004828
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:17399687..17399854
RNA-Seq ExpressionIVF0004828
SyntenyIVF0004828
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058871.1 retrotransposon protein [Cucumis melo var. makuwa]7.56e-2992.73Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYC+DVDDEDEGDSTY TTTASEDI+YIETTNEWSQWRDDLAE MFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]6.48e-3094.55Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYCDD+DDEDEGDSTYATTTASEDI+YIETTNEWSQWRDDLAE MFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

TYK04228.1 retrotransposon protein [Cucumis melo var. makuwa]7.29e-2990.91Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYCD+VDD+DEGDSTYATTTASEDI+YIETTNEWSQWRDDLAE MFTEWQLRN 
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]1.52e-2890.91Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYC+DVDDEDEGDSTYATTTASEDI+YIETTNEWSQWRDDLAE MFT+WQLRN+
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

TYK11987.1 retrotransposon protein [Cucumis melo var. makuwa]1.52e-2892.73Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYC+DVDDEDEGDSTYATTTASEDI+YIETTNEWSQWR+DLAE MFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

TrEMBL top hitse value%identityAlignment
A0A5A7SL78 Retrotransposon protein1.3e-2194.55Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYC+DVDDEDEGDSTYATTTASEDI+YIETTNEWSQWRDDL ELMFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

A0A5A7TKK3 Retrotransposon protein2.6e-2298.18Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYCDDVDDEDEGDSTYATTTA EDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

A0A5A7UG16 Retrotransposon protein2.2e-2194.55Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYCDDV+DEDEGDSTYATTTASEDI+YIETTNEWSQWRDDLAE MFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

A0A5A7V4Q8 Retrotransposon protein9.9e-2294.55Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYCDD+DDEDEGDSTYATTTASEDI+YIETTNEWSQWRDDLAE MFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

A0A5D3BUL1 Retrotransposon protein2.6e-2298.18Show/hide
Query:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
        MTYCDDVDDEDEGDSTYATTTA EDIKYIETTNEWSQWRDDLAELMFTEWQLRNA
Subjt:  MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACATACGCGACGACCACCGCTTCAGAAGACATTAAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGAATTGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGACGACGTTGACGACGAGGACGAGGGGGACTCCACATACGCGACGACCACCGCTTCAGAAGACATTAAGTACATTGAGACAACAAACGAGTGGTCTCA
GTGGCGCGACGACCTAGCCGAATTGATGTTCACCGAATGGCAGTTGCGTAACGCTTAG
Protein sequenceShow/hide protein sequence
MTYCDDVDDEDEGDSTYATTTASEDIKYIETTNEWSQWRDDLAELMFTEWQLRNA