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IVF0004854 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004854
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr03:27079560..27080222
RNA-Seq ExpressionIVF0004854
SyntenyIVF0004854
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061083.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.92e-0691.18Show/hide
Query:  SRLDL-QVSPAETECFLNGVALEGLLSLVVQEAN
        S LDL +VSPAETECFLNGVALEGLLSLVVQEAN
Subjt:  SRLDL-QVSPAETECFLNGVALEGLLSLVVQEAN
KAE8652037.1 hypothetical protein Csa_018665, partial [Cucumis sativus]2.56e-3674.49Show/hide
Query:  VSPAETECFLNGVALEGLLSLVVQEANGE------QRHCKNDGSNIVELGHQIQVIFGRGISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAAT
        V PAETE FLNG+AL+G LSLVVQEANG           KNDGSNI ELGHQI VIF RGI HGF +Q KARSIICNLSSL L+TLGFLSTVQVTAAT
Subjt:  VSPAETECFLNGVALEGLLSLVVQEANGE------QRHCKNDGSNIVELGHQIQVIFGRGISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAAT
TrEMBL top hitse value%identityAlignment
A0A0A0LKG0 Uncharacterized protein1.1e-4170.75Show/hide
Query:  VVDIMSSCISVRGLRLSGKWFIFSLPSWTVQLSGRTKFVAPIYSRLDLQVSPAETECFLNGVALEGLLSLVVQEANGE------QRHCKNDGSNIVELGH
        ++DIMSSCISVRG  L GKWFIF +     + + RTKFVAPI S+LDLQV PAETE FLNG+AL+G LSLVVQEANG           KNDGSNI ELGH
Subjt:  VVDIMSSCISVRGLRLSGKWFIFSLPSWTVQLSGRTKFVAPIYSRLDLQVSPAETECFLNGVALEGLLSLVVQEANGE------QRHCKNDGSNIVELGH

Query:  QIQVIFGRGISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAAT
        QI VIF RGI HGF +Q KARSIICNLSSL L+TLGFLSTVQVTAAT
Subjt:  QIQVIFGRGISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAAT
A0A5A7UYN5 Pentatricopeptide repeat-containing protein4.6e-0591.18Show/hide
Query:  SRLDL-QVSPAETECFLNGVALEGLLSLVVQEAN
        S LDL +VSPAETECFLNGVALEGLLSLVVQEAN
Subjt:  SRLDL-QVSPAETECFLNGVALEGLLSLVVQEAN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATAGTTTTCTCCTCAGTGGTGGATATTATGAGTAGTTGCATTTCAGTTAGAGGTTTGCGTCTGAGTGGTAAATGGTTTATCTTTTCGTTGCCGTCATGGACAGT
TCAGTTATCTGGACGGACAAAATTTGTGGCACCAATTTATTCTCGGCTGGATTTGCAGGTTTCCCCGGCTGAGACAGAATGTTTCCTCAATGGCGTTGCATTGGAGGGTC
TGTTGTCATTGGTGGTTCAGGAAGCCAATGGTGAGCAGCGTCATTGTAAAAACGATGGATCTAATATTGTAGAATTGGGACACCAAATACAAGTGATCTTTGGTCGAGGT
ATCAGCCATGGGTTCAAGCTCCAATCGAAAGCTAGAAGCATCATTTGCAATTTGTCATCACTAAGTCTGAATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGC
AACTTACAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATAGTTTTCTCCTCAGTGGTGGATATTATGAGTAGTTGCATTTCAGTTAGAGGTTTGCGTCTGAGTGGTAAATGGTTTATCTTTTCGTTGCCGTCATGGACAGT
TCAGTTATCTGGACGGACAAAATTTGTGGCACCAATTTATTCTCGGCTGGATTTGCAGGTTTCCCCGGCTGAGACAGAATGTTTCCTCAATGGCGTTGCATTGGAGGGTC
TGTTGTCATTGGTGGTTCAGGAAGCCAATGGTGAGCAGCGTCATTGTAAAAACGATGGATCTAATATTGTAGAATTGGGACACCAAATACAAGTGATCTTTGGTCGAGGT
ATCAGCCATGGGTTCAAGCTCCAATCGAAAGCTAGAAGCATCATTTGCAATTTGTCATCACTAAGTCTGAATACCTTGGGATTTCTCTCAACTGTACAAGTCACAGCTGC
AACTTACAGCTGA
Protein sequenceShow/hide protein sequence
MNIVFSSVVDIMSSCISVRGLRLSGKWFIFSLPSWTVQLSGRTKFVAPIYSRLDLQVSPAETECFLNGVALEGLLSLVVQEANGEQRHCKNDGSNIVELGHQIQVIFGRG
ISHGFKLQSKARSIICNLSSLSLNTLGFLSTVQVTAATYS