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IVF0004868 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004868
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:12312167..12312796
RNA-Seq ExpressionIVF0004868
SyntenyIVF0004868
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]1.22e-5159.76Show/hide
Query:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE
        MP TQ SR   K  P        VLVISLS+F ART RTSTHT GML   F+QGIGREASS EGEL  + KR KRW +L TS E  S VRN+WKCTCS  
Subjt:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE

Query:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTF
        N L SRTSGV   KT+ R  RT+FS    K++PP VS LC VLVISLSIFGA T RTS  T  +L++ F
Subjt:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTF

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.38e-7957.79Show/hide
Query:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQG----------------------------------------------
        MP TQ SR G KSGPPTVSSLC VLVISLS+FGART RTSTHT GML DTFS                                                
Subjt:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQG----------------------------------------------

Query:  ---IGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFG
           + REASS E EL C+LKRSKRW + PT+ E SS VRN+WKCTCSE NGL SRTSG   KKT+AR PR++FS  G K++ PTVS LCFVLVI+LSIF 
Subjt:  ---IGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFG

Query:  ARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT
        ART RTSTHT GML D FS+GIG+E SSLEGEL C     KRW +LPTS ERSS +RNH KCT
Subjt:  ARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.99e-3546.49Show/hide
Query:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE
        MP TQ    G+KSG  TVS  C +LVIS S F     R+S + P ++   FSQ I +E S   GELRC L+R KRW +L     +    +   K   S+ 
Subjt:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE

Query:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELR
        N L SRTSGVY +K QAR  +T+F H G+K+ P TVS  C VLVIS S F  R  R S +  G++   F Q I RE SSL GELR
Subjt:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELR

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]9.29e-4751.01Show/hide
Query:  KRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFS
        K  +RW +LPTS E SS VRN WKCTC E NGL SRTSG   KKT+AR P+T+FS  G K++PPTVS LC VLV SLSIFGA T RTSTHT GML DTFS
Subjt:  KRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFS

Query:  Q------------------------------------------------------GIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT
        +                                                      GIGRE SSLEGEL C     KRWP+LPT GERSS  RNHWKCT
Subjt:  Q------------------------------------------------------GIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]8.81e-5953.19Show/hide
Query:  KSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVY
        K+   TVSSL F+LVISL +FGA TPRTSTHT  ML D FSQGIGREASS EGELRC+ K  KRW +L TS E SS VRN WK TCSE N L SRTS V 
Subjt:  KSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVY

Query:  LKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-------------------------
         KKT AR P+T+F        P                      RT THT GML DTFSQGIGRE SSLEGEL+C                         
Subjt:  LKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-------------------------

Query:  ------------KRWPVLPTSGERSSVVRNHWKCT
                    KRWP+LPTSGERSS VRNHWKCT
Subjt:  ------------KRWPVLPTSGERSSVVRNHWKCT

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein4.0e-3959.76Show/hide
Query:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE
        MP TQ SR   K  P        VLVISLS+F ART RTSTHT GML   F+QGIGREASS EGEL  + KR KRW +L TS E  S VRN+WKCTCS  
Subjt:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE

Query:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTF
        N L SRTSGV   KT+ R  RT+FS    K++PP VS LC VLVISLSIFGA T RTS  T  +L++ F
Subjt:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTF

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein4.5e-6757.79Show/hide
Query:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFS------------------------------------------------
        MP TQ SR G KSGPPTVSSLC VLVISLS+FGART RTSTHT GML DTFS                                                
Subjt:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFS------------------------------------------------

Query:  -QGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFG
           + REASS E EL C+LKRSKRW + PT+ E SS VRN+WKCTCSE NGL SRTSG   KKT+AR PR++FS  G K++ PTVS LCFVLVI+LSIF 
Subjt:  -QGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFG

Query:  ARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT
        ART RTSTHT GML D FS+GIG+E SSLEGEL C     KRW +LPTS ERSS +RNH KCT
Subjt:  ARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT

A0A5D3DFP2 Uncharacterized protein2.0e-3851.01Show/hide
Query:  KRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFS
        K  +RW +LPTS E SS VRN WKCTC E NGL SRTSG   KKT+AR P+T+FS  G K++PPTVS LC VLV SLSIFGA T RTSTHT GML DTFS
Subjt:  KRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFS

Query:  Q------------------------------------------------------GIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT
        +                                                      GIGRE SSLEGEL C     KRWP+LPT GERSS  RNHWKCT
Subjt:  Q------------------------------------------------------GIGREGSSLEGELRC-----KRWPVLPTSGERSSVVRNHWKCT

A0A5D3DFP2 Uncharacterized protein2.4e-0780Show/hide
Query:  TQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHT
        T  SR G KSGPPTVSSLC VLVISLS+FGAR PRTSTH+
Subjt:  TQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHT

A0A5D3DFP2 Uncharacterized protein4.9e-2946.49Show/hide
Query:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE
        MP TQ    G+KSG  TVS  C +LVIS S F     R+S + P ++   FSQ I +E S   GELRC L+R KRW +L     +    +   K   S+ 
Subjt:  MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEE

Query:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELR
        N L SRTSGVY +K QAR  +T+F H G+K+ P TVS  C VLVIS S F  R  R S +  G++   F Q I RE SSL GELR
Subjt:  NGLRSRTSGVYLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELR

A0A5D3DIF8 Gag/pol protein1.2e-4852.77Show/hide
Query:  KSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVY
        K+   TVSSL F+LVISL +FGA TPRTSTHT  ML D FSQGIGREASS EGELRC+ K  KRW +L TS E SS VRN WK TCSE N L SRTS V 
Subjt:  KSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGVY

Query:  LKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-------------------------
         KKT AR P+T+F                               RT THT GML DTFSQGIGRE SSLEGEL+C                         
Subjt:  LKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRC-------------------------

Query:  ------------KRWPVLPTSGERSSVVRNHWKCT
                    KRWP+LPTSGERSS VRNHWKCT
Subjt:  ------------KRWPVLPTSGERSSVVRNHWKCT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCCGACTCAGTTATCTCGTCATGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATGTTCGGGGCTCGTACTCC
GAGGACTTCAACCCACACACCTGGCATGCTCTCAGACACATTTTCACAAGGTATAGGTCGAGAAGCGAGCTCGTTTGAGGGAGAATTAAGGTGTGAACTAAAACGGTCCA
AAAGATGGTCAATTCTTCCAACGAGTTGCGAATCCTCATCTAATGTCCGAAATTACTGGAAATGCACTTGCAGCGAAGAAAATGGGCTGAGATCGAGGACTTCAGGTGTT
TATCTTAAGAAAACGCAAGCAAGAACTCCCCGGACAAAGTTTTCTCATCTTGGGGTAAAAACCAATCCCCCGACGGTTTCTTGCCTTTGCTTCGTATTGGTCATAAGTCT
TTCGATCTTTGGGGCTCGTACTCTAAGGACTTCAACTCACACTCTTGGCATGCTCTCTGACACATTTTCTCAAGGTATAGGTCGGGAAGGGAGCTCGTTAGAGGGAGAAC
TAAGGTGCAAAAGATGGCCAGTACTTCCAACGAGTGGTGAACGCTCGTCCGTCGTCAGAAACCACTGGAAATGCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCCGACTCAGTTATCTCGTCATGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATGTTCGGGGCTCGTACTCC
GAGGACTTCAACCCACACACCTGGCATGCTCTCAGACACATTTTCACAAGGTATAGGTCGAGAAGCGAGCTCGTTTGAGGGAGAATTAAGGTGTGAACTAAAACGGTCCA
AAAGATGGTCAATTCTTCCAACGAGTTGCGAATCCTCATCTAATGTCCGAAATTACTGGAAATGCACTTGCAGCGAAGAAAATGGGCTGAGATCGAGGACTTCAGGTGTT
TATCTTAAGAAAACGCAAGCAAGAACTCCCCGGACAAAGTTTTCTCATCTTGGGGTAAAAACCAATCCCCCGACGGTTTCTTGCCTTTGCTTCGTATTGGTCATAAGTCT
TTCGATCTTTGGGGCTCGTACTCTAAGGACTTCAACTCACACTCTTGGCATGCTCTCTGACACATTTTCTCAAGGTATAGGTCGGGAAGGGAGCTCGTTAGAGGGAGAAC
TAAGGTGCAAAAGATGGCCAGTACTTCCAACGAGTGGTGAACGCTCGTCCGTCGTCAGAAACCACTGGAAATGCACTTGA
Protein sequenceShow/hide protein sequence
MPPTQLSRHGVKSGPPTVSSLCFVLVISLSMFGARTPRTSTHTPGMLSDTFSQGIGREASSFEGELRCELKRSKRWSILPTSCESSSNVRNYWKCTCSEENGLRSRTSGV
YLKKTQARTPRTKFSHLGVKTNPPTVSCLCFVLVISLSIFGARTLRTSTHTLGMLSDTFSQGIGREGSSLEGELRCKRWPVLPTSGERSSVVRNHWKCT