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IVF0004890 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004890
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:7400059..7400508
RNA-Seq ExpressionIVF0004890
SyntenyIVF0004890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032394.1 retrotransposon protein [Cucumis melo var. makuwa]1.99e-5171.05Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQ VRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVRS
        IIAEKELFDNWVRS
Subjt:  IIAEKELFDNWVRS

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]1.37e-5170.8Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVR
        I+AEKELFDNWVR
Subjt:  IIAEKELFDNWVR

KAA0040594.1 retrotransposon protein [Cucumis melo var. makuwa]5.73e-60100Show/hide
Query:  MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL
        MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL
Subjt:  MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]1.37e-5170.8Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVR
        I+AEKELFDNWVR
Subjt:  IIAEKELFDNWVR

KAA0059075.1 retrotransposon protein [Cucumis melo var. makuwa]1.37e-5170.8Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVR
        I+AEKELFDNWVR
Subjt:  IIAEKELFDNWVR

TrEMBL top hitse value%identityAlignment
A0A5A7TAW0 Retrotransposon protein4.1e-45100Show/hide
Query:  MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL
        MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL
Subjt:  MEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL

A0A5A7TRV1 Retrotransposon protein1.7e-3871.05Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVRS
        I+AEKELFDNWVRS
Subjt:  IIAEKELFDNWVRS

A0A5A7VKT2 Retrotransposon protein9.8e-3971.93Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVRS
        IIAEKELFDNWVRS
Subjt:  IIAEKELFDNWVRS

A0A5D3CWL2 Retrotransposon protein1.7e-3871.05Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVRS
        I+AEKELFDNWVRS
Subjt:  IIAEKELFDNWVRS

A0A5D3DCZ1 Retrotransposon protein1.7e-3871.05Show/hide
Query:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC
        M+TS R PRH            CL++LV M GWK DNGTF P YLAQLVRMMAEK+ GCQVRATT+IDC+IKTLKRTFQAIAEM GPACSG  WN   KC
Subjt:  MATSLRTPRH------------CLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKC

Query:  IIAEKELFDNWVRS
        I+AEKELFDNWVRS
Subjt:  IIAEKELFDNWVRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCTCATTGCGTACCCCGAGGCATTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGT
ACGCATGATGGCCGAGAAAATACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGG
GGCCAGCGTGTAGTGGATTGGATTGGAACGTCAGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGAGCATTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCTCATTGCGTACCCCGAGGCATTGTTTAGTGGATTTGGTTGTCATGGAAGGATGGAAATACGACAATGGTACATTCTGGCCCAGTTACCTGGCACAACTAGT
ACGCATGATGGCCGAGAAAATACTAGGATGTCAGGTTCGTGCAACCACTATAATCGACTGCAAAATAAAGACACTGAAGCGGACATTCCAAGCCATCGCAGAAATGTGGG
GGCCAGCGTGTAGTGGATTGGATTGGAACGTCAGTGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTGGGTTAGGAGCATTCTGTAA
Protein sequenceShow/hide protein sequence
MATSLRTPRHCLVDLVVMEGWKYDNGTFWPSYLAQLVRMMAEKILGCQVRATTIIDCKIKTLKRTFQAIAEMWGPACSGLDWNVSAKCIIAEKELFDNWVRSIL