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IVF0004966 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004966
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr12:12808718..12809230
RNA-Seq ExpressionIVF0004966
SyntenyIVF0004966
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035587.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.84e-8589.19Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET              EDDVAVGNSRALNALFN VDQNIFKLINTC
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNV
        KLAKVAWEILKVAFEGTS VKISRLQILTSRFEALQMTEEEIIAEFNV
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNV

KAA0040128.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.42e-7471.18Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        MD I E NSTTRPP++DGGN G WKSRME FLMSLD+RSWR IISGWE+P EKDET              EDD A+GNS ALN LFN VDQNIFKLINT 
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        K AK A +ILKVA+EG SKVK+SRLQILTSRFEALQMTE+E I EFNVRVL I N+S+ALG+KMSD KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

KAA0060257.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.88e-8274.71Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        +DGI EGNSTTRPPL+DGGNYGYWKSR E FLMSLD+R WRAIISGWE+PT+KDET              EDD A+GNSRALN LFN +D NIFKLINTC
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        KLAKVAW+ L+VAFE TSKVKISRLQILTSRF+ALQMT+EE IAEFNVRVL I NESNAL EK+ D KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

KAA0065486.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]1.53e-7571.18Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDE--------------TEDDVAVGNSRALNALFNAVDQNIFKLINTC
        MDGI EGNSTTRPPL+DGGNYGYWKSRM  FLMSLD+RSW+AIISGWE+PT+KDE               EDD  VGNSRALN LFN VDQNIFKLINT 
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDE--------------TEDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        K AK AWEIL+VA+EGTS +K+SR+QILTS F+AL+M E+E IAEF VRVL+IANE   LGEKMSD KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

TYK21749.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.33e-7370.59Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        MD I E NSTTRPP++DGGN G WKSRME FLMSL++RSWR IISGWE+P EKDET              EDD  +GNS ALN LFN VDQNIFKLINT 
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        K AK A +ILKVA+EG SKVK+SRLQILTSRFEALQMTE+E IAEFNVRVL I N+S+ALG+KMSD KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

TrEMBL top hitse value%identityAlignment
A0A5A7T1U7 Gag-pol polyprotein3.2e-6589.19Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET              EDDVAVGNSRALNALFN VDQNIFKLINTC
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNV
        KLAKVAWEILKVAFEGTS VKISRLQILTSRFEALQMTEEEIIAEFNV
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNV

A0A5A7TAY2 Gag-pol polyprotein3.2e-5771.18Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        MD I E NSTTRPP++DGGN G WKSRME FLMSLD+RSWR IISGWE+P EKDET              EDD A+GNS ALN LFN VDQNIFKLINT 
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        K AK A +ILKVA+EG SKVK+SRLQILTSRFEALQMTE+E I EFNVRVL I N+S+ALG+KMSD KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

A0A5A7VGN0 Gag-proteinase polyprotein1.5e-5971.18Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDE--------------TEDDVAVGNSRALNALFNAVDQNIFKLINTC
        MDGI EGNSTTRPPL+DGGNYGYWKSRM  FLMSLD+RSW+AIISGWE+PT+KDE               EDD  VGNSRALN LFN VDQNIFKLINT 
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDE--------------TEDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        K AK AWEIL+VA+EGTS +K+SR+QILTS F+AL+M E+E IAEF VRVL+IANE   LGEKMSD KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

A0A5D3BCH6 Gag-pol polyprotein1.7e-6374.71Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        +DGI EGNSTTRPPL+DGGNYGYWKSR E FLMSLD+R WRAIISGWE+PT+KDET              EDD A+GNSRALN LFN +D NIFKLINTC
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        KLAKVAW+ L+VAFE TSKVKISRLQILTSRF+ALQMT+EE IAEFNVRVL I NESNAL EK+ D KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

A0A5D3DEI5 Gag-pol polyprotein1.2e-5670.59Show/hide
Query:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC
        MD I E NSTTRPP++DGGN G WKSRME FLMSL++RSWR IISGWE+P EKDET              EDD  +GNS ALN LFN VDQNIFKLINT 
Subjt:  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDET--------------EDDVAVGNSRALNALFNAVDQNIFKLINTC

Query:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI
        K AK A +ILKVA+EG SKVK+SRLQILTSRFEALQMTE+E IAEFNVRVL I N+S+ALG+KMSD KL+
Subjt:  KLAKVAWEILKVAFEGTSKVKISRLQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGAATTCATGAAGGAAACTCAACCACTAGGCCACCCCTTATAGATGGAGGAAACTATGGTTACTGGAAGTCTCGCATGGAGGTGTTTCTTATGTCGCTGGACAT
AAGGAGTTGGAGAGCCATTATCTCAGGATGGGAGAACCCCACTGAAAAGGATGAAACTGAAGATGATGTAGCAGTGGGCAACTCACGAGCACTGAATGCATTGTTTAATG
CTGTTGATCAAAACATATTCAAATTAATCAACACCTGCAAGTTGGCCAAGGTCGCATGGGAGATCCTGAAGGTGGCTTTTGAAGGAACATCGAAGGTGAAAATCTCACGC
TTGCAGATTCTGACATCACGTTTCGAAGCACTTCAAATGACTGAAGAAGAGATTATCGCTGAGTTCAATGTTCGAGTACTTCACATTGCCAACGAATCAAATGCTCTAGG
AGAGAAGATGTCTGACTTAAAACTTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGAATTCATGAAGGAAACTCAACCACTAGGCCACCCCTTATAGATGGAGGAAACTATGGTTACTGGAAGTCTCGCATGGAGGTGTTTCTTATGTCGCTGGACAT
AAGGAGTTGGAGAGCCATTATCTCAGGATGGGAGAACCCCACTGAAAAGGATGAAACTGAAGATGATGTAGCAGTGGGCAACTCACGAGCACTGAATGCATTGTTTAATG
CTGTTGATCAAAACATATTCAAATTAATCAACACCTGCAAGTTGGCCAAGGTCGCATGGGAGATCCTGAAGGTGGCTTTTGAAGGAACATCGAAGGTGAAAATCTCACGC
TTGCAGATTCTGACATCACGTTTCGAAGCACTTCAAATGACTGAAGAAGAGATTATCGCTGAGTTCAATGTTCGAGTACTTCACATTGCCAACGAATCAAATGCTCTAGG
AGAGAAGATGTCTGACTTAAAACTTATTTGA
Protein sequenceShow/hide protein sequence
MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDETEDDVAVGNSRALNALFNAVDQNIFKLINTCKLAKVAWEILKVAFEGTSKVKISR
LQILTSRFEALQMTEEEIIAEFNVRVLHIANESNALGEKMSDLKLI