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IVF0004991 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0004991
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:14862859..14863281
RNA-Seq ExpressionIVF0004991
SyntenyIVF0004991
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]3.40e-3450.36Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        M DGND+E   MY+ G ++SQDD+ TS+P C  + R  SS SKRKRG QR GE+++I+  ++ +NDQLR I+EWP     NET VRQE LR L  M +LS
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE
         LDR  C   L  S+D+M S + MT+EE+  FC + LR+
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE

KAA0050806.1 retrotransposon protein [Cucumis melo var. makuwa]3.54e-3147.48Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        M DGN+ E  ++Y+ G +MSQ+D+  S+P    N R  SS  KRKRG Q+ GEI++IH  ++ +NDQL+ IVEW    L N T V QE +R LR M ELS
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE
         LDRA C   L   +D+M   ++MTN+E+  FC +LLR+
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE

KAA0056139.1 retrotransposon protein [Cucumis melo var. makuwa]1.27e-3050.69Show/hide
Query:  DGNDMEIHTMYNHGFNMSQ------DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAM
        D ND+EI TMYN GFNMS+      D +     G   +D++      +K GGQRV  ++LIH+ M+  NDQLR IVEW  V L NET V QEVL +L A+
Subjt:  DGNDMEIHTMYNHGFNMSQ------DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAM

Query:  LELSRLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
         ELSRLDR   S  LF +LD+M   L +  +EKM+FCT+LLRED
Subjt:  LELSRLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED

KAA0060299.1 retrotransposon protein [Cucumis melo var. makuwa]2.12e-9498.57Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        MPDGNDMEIHTMYNHGFNMSQDD+STSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNET VRQEVLRKLRAMLELS
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
        RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]1.00e-3149.26Show/hide
Query:  DGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRL
        D NDME  +M +H FNMSQDD++  RP    + RT SSGSKR+RGGQ +   ++I + M    D+LR I EWP + L +E+ VR+EV+R LRA+ ELSRL
Subjt:  DGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRL

Query:  DRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLR
        D A C+  L ++L +M   L ++NEEK+++CT+L+R
Subjt:  DRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLR

TrEMBL top hitse value%identityAlignment
A0A5A7U4I8 Retrotransposon protein9.2e-2448.91Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        M DGN+ E  +MY+ G +MSQ+D+  SRP      R  SSGSKRKR  Q+ GEIE+IH  +E  NDQLR I EWP   L N+T VRQE+LR L  M EL+
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILL
         LDR  C   L   +D+M   ++M ++E+  FC +LL
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILL

A0A5A7U9D5 Retrotransposon protein5.4e-2447.48Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        M DGN+ E  ++Y+ G +MSQ+D+  S+P    N R  SS  KRKRG Q+ GEI++IH  ++ +NDQL+ IVEW    L N T V QE +R LR M ELS
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE
         LDRA C   L   +D+M   ++MTN+E+  FC +LLR+
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE

A0A5A7URM1 Retrotransposon protein7.1e-2451.75Show/hide
Query:  DGNDMEIHTMYNHGFNMSQ-----DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAML
        D ND+EI TMYN GFNMS+      DL    P    +     S   +K GGQRV  ++LIH+ M+  NDQLR IVEW  V L NET V QEVL +L A+ 
Subjt:  DGNDMEIHTMYNHGFNMSQ-----DDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAML

Query:  ELSRLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
        ELSRLDR   S  LF +LD+M   L +  +EKM+FCT+LLRED
Subjt:  ELSRLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED

A0A5A7V3G0 Retrotransposon protein1.2e-7198.57Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        MPDGNDMEIHTMYNHGFNMSQDD+STSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNET VRQEVLRKLRAMLELS
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
        RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRED

A0A5D3BQI7 Retrotransposon protein1.1e-2750.36Show/hide
Query:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS
        M DGND+E   MY+ G ++SQDD+ TS+P C  + R  SS SKRKRG QR GE+++I+  ++ +NDQLR I+EWP     NET VRQE LR L  M +LS
Subjt:  MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELS

Query:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE
         LDR  C   L  S+D+M S + MT+EE+  FC + LR+
Subjt:  RLDRASCSWSLFHSLDNMCSSLRMTNEEKMEFCTILLRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGAC
CGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGT
GGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGC
CTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATTTAAGCACCTCACGACCTGGTTGTGCGTTCAACGATAGGAC
CGGATCGAGTGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGT
GGCCTATTGTCATGCTTCATAATGAGACCATAGTTCGCCAGGAAGTCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGC
CTCTTTCACAGTTTAGACAACATGTGCAGTTCCTTGAGGATGACTAACGAGGAGAAGATGGAATTCTGCACGATCCTGCTACGAGAAGATTGA
Protein sequenceShow/hide protein sequence
MPDGNDMEIHTMYNHGFNMSQDDLSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETIVRQEVLRKLRAMLELSRLDRASCSWS
LFHSLDNMCSSLRMTNEEKMEFCTILLRED