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IVF0005016 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005016
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr08:18224293..18224842
RNA-Seq ExpressionIVF0005016
SyntenyIVF0005016
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.01e-6662.36Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELA--------SIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITI
        +NFLTKYH I D SNKEVVLR+  K E+          II VLK  KL++  H +YLAHVI+T   ++D   VPIVCEY+DVFP+ELS L  + EI+ TI
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELA--------SIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITI

Query:  DVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        +++  TTPISQTPYRMA  ELKELK+QL+EL+EK  IQP T PW  PILF +K+DGS+RLCIDYRQLNKVT+KNKYPL
Subjt:  DVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

KAA0036100.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.29e-6358.89Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELA----------SIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEI
        M+FL  ++  +DC  KEVV R+ G  E+           S+ISVLK  KL+RK  TA+LAH++  +  K   ++VP+V E+LDVFP++LS L    EIE 
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELA----------SIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEI

Query:  TIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        TI++LP T PISQ PYRMAPSELKELK QL+EL++KG I+PS LPWG P+LFVKKKDG++RLCIDYRQLNKVTI+NKYPL
Subjt:  TIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

KAA0040571.1 uncharacterized protein E6C27_scaffold262G001410 [Cucumis melo var. makuwa]1.17e-6260Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
        M FLTKYH +LDC NKE                     KL++K HTAYL HV+DT+  + D   VPIVCEYLDVF EELS  + K EIE  I V   +T 
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP

Query:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        ISQ PY M P+++KELK+QLEEL+EKG I+P+T PWG P+LFVK KDGSMRLCIDYRQL+KVTIKNKYPL
Subjt:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

KAA0041141.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.83e-8785.9Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
        MNFLTKYH ILDCSNKEVVLRELGKFE             ++ RHTAYLAHVIDT+MVKSDL+NVPIV EYLDVFPEELSRLA KGEIEITIDVLPRTTP
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP

Query:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDY
        ISQTPYRMAPSELKELKDQLEELLEKG IQPSTLPWGIPILFVKKKDGSMRLCIDY
Subjt:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDY

TYK02467.1 uncharacterized protein E5676_scaffold1738G00930 [Cucumis melo var. makuwa]5.96e-10590.64Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
        MNFLTKYHEILDCSNKEVVLRELGKFE             ++ RHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP

Query:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL
        ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL
Subjt:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL

TrEMBL top hitse value%identityAlignment
A0A2N9EJD6 Reverse transcriptase domain-containing protein5.4e-5057.78Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFE----------LASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEI
        MN+L  YH  +DC  KEVV R LG+ E          L  +IS L+ N+L+RK    +LA V+D +  + ++K++PIV E+ DVFPE+LS L    E+E 
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFE----------LASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEI

Query:  TIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        +ID++P T PIS+ PYRMAP+ELKELK QL+ELL+KG I+PS+ PWG PILFVKKKDGSMRLCIDYR+LN+VTIKNKYPL
Subjt:  TIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

A0A5A7SYG0 DNA/RNA polymerases superfamily protein7.0e-5058.89Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELA----------SIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEI
        M+FL  ++  +DC  KEVV R+ G  E+           S+ISVLK  KL+RK  TA+LAH++  +  K   ++VP+V E+LDVFP++LS L    EIE 
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELA----------SIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEI

Query:  TIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        TI++LP T PISQ PYRMAPSELKELK QL+EL++KG I+PS LPWG P+LFVKKKDG++RLCIDYRQLNKVTI+NKYPL
Subjt:  TIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

A0A5A7THJ0 DNA/RNA polymerases superfamily protein4.1e-6685.9Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
        MNFLTKYH ILDCSNKEVVLRELGKFE             ++ RHTAYLAHVIDT+MVKSDL+NVPIV EYLDVFPEELSRLA KGEIEITIDVLPRTTP
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP

Query:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDY
        ISQTPYRMAPSELKELKDQLEELLEKG IQPSTLPWGIPILFVKKKDGSMRLCIDY
Subjt:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDY

A0A5D3BSQ2 Uncharacterized protein5.0e-8090.64Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
        MNFLTKYHEILDCSNKEVVLRELGKFE             ++ RHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTP

Query:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL
        ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL
Subjt:  ISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL

A0A5D3D2P1 Putative Retrotransposon protein1.5e-5262.36Show/hide
Query:  MNFLTKYHEILDCSNKEVVLRELGKFEL--------ASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITI
        +NFLTKYH I D SNKEVVLR+  K E+          II VLK  KL++  H +YLAHVI+T   ++D   VPIVCEY+DVFP+ELS L  + EI+ TI
Subjt:  MNFLTKYHEILDCSNKEVVLRELGKFEL--------ASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITI

Query:  DVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        +++  TTPISQTPYRMA  ELKELK+QL+EL+EK  IQP T PW  PILF +K+DGS+RLCIDYRQLNKVT+KNKYPL
Subjt:  DVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.2e-0729.89Show/hide
Query:  LKGEIEITIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        +KG +E  +++      +    Y + P +++ + D++ + L+ G I+ S      P++FV KK+G++R+ +DY+ LNK    N YPL
Subjt:  LKGEIEITIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

P0CT41 Transposon Tf2-12 polyprotein3.2e-0729.89Show/hide
Query:  LKGEIEITIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        +KG +E  +++      +    Y + P +++ + D++ + L+ G I+ S      P++FV KK+G++R+ +DY+ LNK    N YPL
Subjt:  LKGEIEITIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.2e-1137.5Show/hide
Query:  PEELSRLALKGEIEITIDV-LPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        P +++ + +K +IEI     LPR       PY +     +E+   +++LL+   I PS  P   P++ V KKDG+ RLC+DYR LNK TI + +PL
Subjt:  PEELSRLALKGEIEITIDV-LPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.2e-1137.5Show/hide
Query:  PEELSRLALKGEIEITIDV-LPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        P +++ + +K +IEI     LPR       PY +     +E+   +++LL+   I PS  P   P++ V KKDG+ RLC+DYR LNK TI + +PL
Subjt:  PEELSRLALKGEIEITIDV-LPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

Q9UR07 Transposon Tf2-11 polyprotein3.2e-0729.89Show/hide
Query:  LKGEIEITIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL
        +KG +E  +++      +    Y + P +++ + D++ + L+ G I+ S      P++FV KK+G++R+ +DY+ LNK    N YPL
Subjt:  LKGEIEITIDVLPRTTPISQTPYRMAPSELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTCCTTACCAAATACCATGAAATATTGGATTGCTCCAATAAGGAGGTAGTATTGAGAGAACTTGGGAAATTTGAATTGGCCAGTATAATATCTGTACTTAAGAC
AAACAAACTAATAAGAAAGAGGCACACCGCCTATCTTGCTCATGTGATTGACACCAAAATGGTAAAGAGTGACCTAAAAAATGTGCCAATAGTCTGCGAATACTTGGATG
TATTCCCAGAGGAACTGAGCAGACTAGCACTAAAAGGAGAAATTGAGATTACAATTGATGTGTTGCCAAGAACAACACCCATTTCCCAAACCCCTTACCGCATGGCACCA
AGCGAGTTGAAAGAACTAAAGGATCAATTAGAGGAATTGTTGGAGAAAGGTTGTATCCAGCCTAGCACCTTGCCATGGGGGATCCCTATCCTGTTTGTAAAGAAGAAGGA
TGGATCAATGAGGCTATGCATTGACTACCGACAATTGAACAAAGTAACAATAAAAAACAAGTATCCTTTACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTCCTTACCAAATACCATGAAATATTGGATTGCTCCAATAAGGAGGTAGTATTGAGAGAACTTGGGAAATTTGAATTGGCCAGTATAATATCTGTACTTAAGAC
AAACAAACTAATAAGAAAGAGGCACACCGCCTATCTTGCTCATGTGATTGACACCAAAATGGTAAAGAGTGACCTAAAAAATGTGCCAATAGTCTGCGAATACTTGGATG
TATTCCCAGAGGAACTGAGCAGACTAGCACTAAAAGGAGAAATTGAGATTACAATTGATGTGTTGCCAAGAACAACACCCATTTCCCAAACCCCTTACCGCATGGCACCA
AGCGAGTTGAAAGAACTAAAGGATCAATTAGAGGAATTGTTGGAGAAAGGTTGTATCCAGCCTAGCACCTTGCCATGGGGGATCCCTATCCTGTTTGTAAAGAAGAAGGA
TGGATCAATGAGGCTATGCATTGACTACCGACAATTGAACAAAGTAACAATAAAAAACAAGTATCCTTTACTGTGA
Protein sequenceShow/hide protein sequence
MNFLTKYHEILDCSNKEVVLRELGKFELASIISVLKTNKLIRKRHTAYLAHVIDTKMVKSDLKNVPIVCEYLDVFPEELSRLALKGEIEITIDVLPRTTPISQTPYRMAP
SELKELKDQLEELLEKGCIQPSTLPWGIPILFVKKKDGSMRLCIDYRQLNKVTIKNKYPLL