; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0005025 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005025
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr03:2708452..2709287
RNA-Seq ExpressionIVF0005025
SyntenyIVF0005025
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037445.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.23e-9756.69Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF++NNLLIDPPL NN+FTWSN+RNP  FSRIDRFLYN++WE+ F PHTT+T    TSDHFPL+CEDS   LSWGP PFRLN I L+D EFKRNM R
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNE-----------------------
        WW +S Q GHPGFSFIQ+LKSLANFI PWQ EKLHSL   K+++I+EVDSIDKKE+D+ LTQEESNRRL+LK DL+E                       
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNE-----------------------

Query:  ------------------------DGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                                +G  QNTNN IS+ F KFFS IY+ + K +  F+DNLDW PI+ ++WPHLC P  +  +K
Subjt:  ------------------------DGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

KAA0041528.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.10e-13297.94Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSN
        MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSN
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSN

Query:  QSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIY
        QSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNK   S+Y
Subjt:  QSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIY

KAA0058104.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.19e-9556.34Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF+SNNLLIDPPLTNN++TWSN+RNP  FS +DRFLYN+SWE  F PH T+T    TSDHFPL+CEDST  L WGPAPFRLN I LND EFKRNMER
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLK---NDL----------------------
        WW  S Q+GHPGFSFIQ+LKSLAN IKPWQ EK HSL + KE++I+EVD+IDK E+D+ L+QEESNRRL+LK   NDL                      
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLK---NDL----------------------

Query:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                              NE+GS QNTNNNIS  F   FS IY+ + K +  F++NL+W PID++DW  LC P  ++ +K
Subjt:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.83e-9457.39Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF+SNNLLIDPPLTNN++TWSN+RN   FSR+DRFL+N+SWE  FKPH T+T    TSDHFPL+CEDST  L WGPAPFRLN I LND EFKRNMER
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLN------------------------
        WW  S Q+GHP FSFIQ+LKSLAN IKPWQ EK HSL S KE++I+EVDSIDKKE+D+ L+QEESNRRL+LK +L+                        
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLN------------------------

Query:  -----------------------EDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                               E+GS QNTNNNIS  F K FSSIY+ + K + FF++NLDW PID++DW  LC P  +  +K
Subjt:  -----------------------EDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.83e-9357.75Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF+SNNLLIDPPLTNN+FTWSN+RNP  FSRIDRFLYN+SWE+ F PHTT+T    TSDHFPL+CEDS   LSWGP PFRLN I L+D EFKRNM R
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNE-----------------------
        WW +S Q+G+PGFSFIQ+LKSLANFIKPWQ EKLHSL   KE +I+EVDSIDKKE+D+ LTQEESNRRL+LK DL+E                       
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNE-----------------------

Query:  ------------------------DGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                                +GS QNTNN+IS+ F KFFS IY+ + K +  F++NLDW PI  ++W HLC P  +  +K
Subjt:  ------------------------DGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

TrEMBL top hitse value%identityAlignment
A0A5A7TF44 LINE-1 retrotransposable element ORF2 protein3.0e-10497.94Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSN
        MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSN
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSN

Query:  QSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIY
        QSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNK   S+Y
Subjt:  QSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIY

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein1.0e-8057.39Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICED--STLSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF+SNNLLIDPPLTNN++TWSN+RN   FSR+DRFL+N+SWE  FKPH T+T    TSDHFPL+CED  STL WGPAPFRLN I LND EFKRNMER
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICED--STLSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDL-------------------------
        WW  S Q+GHP FSFIQ+LKSLAN IKPWQ EK HSL S KE++I+EVDSIDKKE+D+ L+QEESNRRL+LK +L                         
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDL-------------------------

Query:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                              +E+GS QNTNNNIS  F K FSSIY+ + K + FF++NLDW PID++DW  LC P  +  +K
Subjt:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

A0A5A7UV84 Reverse transcriptase domain-containing protein2.7e-8164.56Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF+SNNLLIDPPLTNN+FTWSN+RNP  FSRIDRFLYN+SWE+ F PHTT+T    TSDHFPL+CEDS   L WGPAPFRLN I LND EFKRNMER
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIY
        WW +S Q+GHPGFSFIQ+LKSLAN IKPWQ EKLHSL   KE +I+EVDSIDKKE+D+ L+Q+ESNRRL+LK +L++          +S   ++F   IY
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIY

Query:  KGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
        K + K +  F++NLDW PI+F++WPHLC P  ++ +K
Subjt:  KGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein3.2e-8257.75Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF+SNNLLIDPPLTNN+FTWSN+RNP  FSRIDRFLYN+SWE+ F PHTT+T    TSDHFPL+CEDS   LSWGP PFRLN I L+D EFKRNM R
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDL-------------------------
        WW +S Q+G+PGFSFIQ+LKSLANFIKPWQ EKLHSL   KE +I+EVDSIDKKE+D+ LTQEESNRRL+LK DL                         
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDL-------------------------

Query:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                              +E+GS QNTNN+IS+ F KFFS IY+ + K +  F++NLDW PI  ++W HLC P  +  +K
Subjt:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

A0A5D3BUZ3 LINE-1 retrotransposable element ORF2 protein4.2e-8256.69Show/hide
Query:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER
        MLNNF++NNLLIDPPL NN+FTWSN+RNP  FSRIDRFLYN++WE+ F PHTT+T    TSDHFPL+CEDS   LSWGP PFRLN I L+D EFKRNM R
Subjt:  MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKT----TSDHFPLICEDST--LSWGPAPFRLNKIVLNDLEFKRNMER

Query:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDL-------------------------
        WW +S Q GHPGFSFIQ+LKSLANFI PWQ EKLHSL   K+++I+EVDSIDKKE+D+ LTQEESNRRL+LK DL                         
Subjt:  WWTDSNQSGHPGFSFIQKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDL-------------------------

Query:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK
                              +E+G  QNTNN IS+ F KFFS IY+ + K +  F+DNLDW PI+ ++WPHLC P  +  +K
Subjt:  ----------------------NEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPHLCTPSKKKRLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAACTTTATGTCCAACAACCTCCTGATAGACCCACCTCTCACAAACAACAAATTCACCTGGTCCAATATAAGAAATCCTCTTATGTTCTCCCGCATTGATAG
ATTTCTCTACAATACAAGTTGGGAGGATTCGTTCAAGCCCCATACCACCAAAACTACTTCAGATCACTTCCCTTTGATATGCGAAGACTCTACCCTTAGCTGGGGTCCTG
CTCCGTTCAGGCTAAATAAAATTGTCTTAAATGACCTAGAATTCAAACGAAATATGGAAAGATGGTGGACAGACTCCAATCAAAGTGGCCACCCCGGGTTTTCCTTCATC
CAAAAGCTGAAGTCTCTTGCTAATTTTATCAAGCCTTGGCAAAATGAAAAGCTTCACTCCCTCAAATCAACCAAAGAAGATTTAATTAAAGAAGTGGATAGCATTGACAA
GAAGGAAATAGACTCTTTCCTAACACAGGAGGAGAGTAACCGTAGACTTTCTCTGAAAAATGATCTCAATGAAGATGGCTCAGCTCAGAACACAAATAACAACATCTCAA
GCACCTTCAATAAGTTCTTTTCTTCCATATACAAAGGCAACAATAAAATGGAGAATTTCTTCCTAGACAATCTTGATTGGTACCCCATTGACTTCGCAGATTGGCCCCAT
CTTTGTACCCCTTCAAAGAAGAAGAGATTAAAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAACTTTATGTCCAACAACCTCCTGATAGACCCACCTCTCACAAACAACAAATTCACCTGGTCCAATATAAGAAATCCTCTTATGTTCTCCCGCATTGATAG
ATTTCTCTACAATACAAGTTGGGAGGATTCGTTCAAGCCCCATACCACCAAAACTACTTCAGATCACTTCCCTTTGATATGCGAAGACTCTACCCTTAGCTGGGGTCCTG
CTCCGTTCAGGCTAAATAAAATTGTCTTAAATGACCTAGAATTCAAACGAAATATGGAAAGATGGTGGACAGACTCCAATCAAAGTGGCCACCCCGGGTTTTCCTTCATC
CAAAAGCTGAAGTCTCTTGCTAATTTTATCAAGCCTTGGCAAAATGAAAAGCTTCACTCCCTCAAATCAACCAAAGAAGATTTAATTAAAGAAGTGGATAGCATTGACAA
GAAGGAAATAGACTCTTTCCTAACACAGGAGGAGAGTAACCGTAGACTTTCTCTGAAAAATGATCTCAATGAAGATGGCTCAGCTCAGAACACAAATAACAACATCTCAA
GCACCTTCAATAAGTTCTTTTCTTCCATATACAAAGGCAACAATAAAATGGAGAATTTCTTCCTAGACAATCTTGATTGGTACCCCATTGACTTCGCAGATTGGCCCCAT
CTTTGTACCCCTTCAAAGAAGAAGAGATTAAAGATGTGA
Protein sequenceShow/hide protein sequence
MLNNFMSNNLLIDPPLTNNKFTWSNIRNPLMFSRIDRFLYNTSWEDSFKPHTTKTTSDHFPLICEDSTLSWGPAPFRLNKIVLNDLEFKRNMERWWTDSNQSGHPGFSFI
QKLKSLANFIKPWQNEKLHSLKSTKEDLIKEVDSIDKKEIDSFLTQEESNRRLSLKNDLNEDGSAQNTNNNISSTFNKFFSSIYKGNNKMENFFLDNLDWYPIDFADWPH
LCTPSKKKRLKM