; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0005098 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005098
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationtig00001954:92610..94323
RNA-Seq ExpressionIVF0005098
SyntenyIVF0005098
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034761.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]1.26e-15677.33Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------------
        NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                          
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------------

Query:  ------------------------------------MLVATEDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                            ++    DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  ------------------------------------MLVATEDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

KAG7031925.1 Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]3.87e-13574.37Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPPN   PD+V+DR+R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA----------------MLVATE----
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA                +L+ ++    
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA----------------MLVATE----

Query:  -------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                           DASFKKSLPG VRAPAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD K
Subjt:  -------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

XP_004142483.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]4.31e-15881.69Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPG
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVATE
        NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                    +L+ ++
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVATE

Query:  --------------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                  DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  --------------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

XP_008446964.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]5.27e-15982.04Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVATE
        NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                    +L+ ++
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVATE

Query:  --------------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                  DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  --------------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]2.77e-14276.06Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLL ATPCLPP QP PN  T DDVTDR+R+ +NLKRTQDFGFGKG+SL+GG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVATE
        NN SDE VKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                    +L+ ++
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVATE

Query:  --------------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                  DASFKKSLPGHVRAPAVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  --------------------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein6.0e-12481.69Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPG
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVAT-
        NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                    +L+ + 
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVAT-

Query:  -------------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                 +DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  -------------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 11.2e-12482.04Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVAT-
        NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                    +L+ + 
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------MLVAT-

Query:  -------------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                 +DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  -------------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 15.1e-12377.33Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------------
        NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA                          
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA--------------------------

Query:  ------------------------------------MLVATEDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                                            ++    DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Subjt:  ------------------------------------MLVATEDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like3.7e-10572.86Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+++DR+R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA----------------MLVAT-----
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA                +L+ +     
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA----------------MLVAT-----

Query:  ---------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                             +DASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD K
Subjt:  ---------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

A0A6J1JNR9 protein LATERAL ROOT PRIMORDIUM 1-like isoform X22.8e-10574.01Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+V+DR R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPG

Query:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA----------------MLVAT-----
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA                +L+ +     
Subjt:  NNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA----------------MLVAT-----

Query:  ------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                          +DASFKKSLPG VRAPAVF+CHRVTAISSG GEL YQATVNIGGHVFKGFLYDQGAD K
Subjt:  ------------------EDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

SwissProt top hitse value%identityAlignment
K4B6C9 Protein EXPRESSION OF TERPENOIDS 19.2e-2941.8Show/hide
Query:  DFGFGKGESLIGGPGNNGSDE-----HVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVM----------
        D G G G S  G   + G  E      V   +G G ++ C+DCGN+AKK+C++ RCRTCCK RG  C THVKSTWVPAA+RRERQ  +            
Subjt:  DFGFGKGESLIGGPGNNGSDE-----HVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVM----------

Query:  -------------DGVAMLVATEDASFKKSL-----PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKMHS
                        + LV+T   S    L     P  VR  AVF+C ++++I   E +LAYQA V+IGGHVFKG LYDQG + + ++
Subjt:  -------------DGVAMLVATEDASFKKSL-----PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKMHS

O65517 Protein SHI RELATED SEQUENCE 21.3e-2744.3Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVM----------DGVA--------------MLVATEDAS-----------F
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M           G A               L  T  +S            
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVM----------DGVA--------------MLVATEDAS-----------F

Query:  KKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGADDKMHS
        + S PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +    S
Subjt:  KKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGADDKMHS

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 16.3e-3839.16Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A         P  N    D+       R +  +N   TQ   F      
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL

Query:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------
          G  +N S       +G    A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        G ++  +             
Subjt:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------

Query:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                      T   SF            +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K
Subjt:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Q9M2U4 Protein SHI RELATED SEQUENCE 62.2e-3052.63Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRR------ERQMLVVMD-----GVAMLVAT---EDASFKKSLPGHVRAPAVFRCHRVT
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R      ER+  + +D      V++L  T   ++  F++ LPG + APAVF+  RVT
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRR------ERQMLVVMD-----GVAMLVAT---EDASFKKSLPGHVRAPAVFRCHRVT

Query:  AISSGE-GELAYQATVNIGGHVFKGFLYDQGAD
        AIS+ E  E+ YQATV I GH+FKGFL+  G D
Subjt:  AISSGE-GELAYQATVNIGGHVFKGFLYDQGAD

Q9SD40 Protein SHI RELATED SEQUENCE 11.6e-2837.25Show/hide
Query:  HQQTQII--SSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVK-GDAGD
        H Q +I+     H   L L SS A G+ VG                 P+NH   D++                   GE+   G G   +   ++ G +G 
Subjt:  HQQTQII--SSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVK-GDAGD

Query:  GSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRER--QMLVVMDGVAM-------------LVATEDASFKKSLPGH-------
        GS  V C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPAA+RRER  Q+  V     +             L AT  +     +P H       
Subjt:  GSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRER--QMLVVMDGVAM-------------LVATEDASFKKSLPGH-------

Query:  ----VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
            V + AVFRC RV+++  GE E AYQ  V+IGGH+FKG LYD G
Subjt:  ----VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related1.1e-2937.25Show/hide
Query:  HQQTQII--SSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVK-GDAGD
        H Q +I+     H   L L SS A G+ VG                 P+NH   D++                   GE+   G G   +   ++ G +G 
Subjt:  HQQTQII--SSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVK-GDAGD

Query:  GSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRER--QMLVVMDGVAM-------------LVATEDASFKKSLPGH-------
        GS  V C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPAA+RRER  Q+  V     +             L AT  +     +P H       
Subjt:  GSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRER--QMLVVMDGVAM-------------LVATEDASFKKSLPGH-------

Query:  ----VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
            V + AVFRC RV+++  GE E AYQ  V+IGGH+FKG LYD G
Subjt:  ----VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG

AT3G54430.1 SHI-related sequence 61.6e-3152.63Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRR------ERQMLVVMD-----GVAMLVAT---EDASFKKSLPGHVRAPAVFRCHRVT
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R      ER+  + +D      V++L  T   ++  F++ LPG + APAVF+  RVT
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRR------ERQMLVVMD-----GVAMLVAT---EDASFKKSLPGHVRAPAVFRCHRVT

Query:  AISSGE-GELAYQATVNIGGHVFKGFLYDQGAD
        AIS+ E  E+ YQATV I GH+FKGFL+  G D
Subjt:  AISSGE-GELAYQATVNIGGHVFKGFLYDQGAD

AT5G12330.1 Lateral root primordium (LRP) protein-related4.5e-3939.16Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A         P  N    D+       R +  +N   TQ   F      
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL

Query:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------
          G  +N S       +G    A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        G ++  +             
Subjt:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------

Query:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                      T   SF            +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K
Subjt:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

AT5G12330.2 Lateral root primordium (LRP) protein-related4.5e-3939.16Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A         P  N    D+       R +  +N   TQ   F      
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL

Query:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------
          G  +N S       +G    A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        G ++  +             
Subjt:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------

Query:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                      T   SF            +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K
Subjt:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

AT5G12330.4 Lateral root primordium (LRP) protein-related4.5e-3939.16Show/hide
Query:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL
        M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A         P  N    D+       R +  +N   TQ   F      
Subjt:  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESL

Query:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------
          G  +N S       +G    A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        G ++  +             
Subjt:  IGGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVV----MDGVAMLVA-------------

Query:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
                      T   SF            +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K
Subjt:  --------------TEDASF------------KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTCCCCTCCTC
CACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTCACCGATC
GTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGAAAAGGAGAATCCTTGATCGGCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGC
GACGCTGGGGATGGTTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTG
CTCTACGCACGTGAAGAGCACGTGGGTGCCCGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCATGCTAGTGGCGACGGAGGATGCAAGCT
TCAAGAAGTCATTACCGGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGAGAGTTAGCTTACCAAGCAACAGTCAAT
ATTGGTGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAA
TAGACATTCTTCTCTTCATTCTTCTCCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTCGACCACTTGAAAAAAATGATATCTGTGCTAAGATTTCAG
AGGTCTGTTGTGTTATCTACAAGTTTTATATAGTTGTTATCATGGTAGTAATGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTCCCCTCCTC
CACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTCACCGATC
GTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGAAAAGGAGAATCCTTGATCGGCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGC
GACGCTGGGGATGGTTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTG
CTCTACGCACGTGAAGAGCACGTGGGTGCCCGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCATGCTAGTGGCGACGGAGGATGCAAGCT
TCAAGAAGTCATTACCGGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGAGAGTTAGCTTACCAAGCAACAGTCAAT
ATTGGTGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAA
TAGACATTCTTCTCTTCATTCTTCTCCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTCGACCACTTGAAAAAAATGATATCTGTGCTAAGATTTCAG
AGGTCTGTTGTGTTATCTACAAGTTTTATATAGTTGTTATCATGGTAGTAATGCAATGA
Protein sequenceShow/hide protein sequence
MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKG
DAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAMLVATEDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVN
IGGHVFKGFLYDQGADDKMHSHLFHISIWTVVTTTGNRHSSLHSSPILPLITLLLLKTRSRPLEKNDICAKISEVCCVIYKFYIVVIMVVMQ