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IVF0005115 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005115
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr10:23082987..23083139
RNA-Seq ExpressionIVF0005115
SyntenyIVF0005115
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037842.1 retrotransposon protein [Cucumis melo var. makuwa]2.01e-0658.54Show/hide
Query:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL
        GARA+TFADI  NV   +D + AEDG+  EFPTMCSP  ++
Subjt:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL
KAA0037992.1 retrotransposon protein [Cucumis melo var. makuwa]8.66e-0875Show/hide
Query:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS
        GA A+TFADIESNVL  S  +Q EDGLD+EFPTMCS
Subjt:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS
KAA0040975.1 retrotransposon protein [Cucumis melo var. makuwa]3.26e-25100Show/hide
Query:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
        MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Subjt:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
TYK20324.1 retrotransposon protein [Cucumis melo var. makuwa]6.85e-25100Show/hide
Query:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
        MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Subjt:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
TYK23236.1 hypothetical protein E5676_scaffold142G002800 [Cucumis melo var. makuwa]3.69e-0660.98Show/hide
Query:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL
        GA A TFADI  N+   SD VQ +DGLD+EFP MCSP  S+
Subjt:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL
TrEMBL top hitse value%identityAlignment
A0A5A7T2Z5 Retrotransposon protein3.8e-0458.54Show/hide
Query:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL
        GARA+TFADI  NV   +D + AEDG+  EFPTMCSP  ++
Subjt:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSL
A0A5A7T3D0 Retrotransposon protein2.0e-0575Show/hide
Query:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS
        GA A+TFADIESNVL  S  +Q EDGLD+EFPTMCS
Subjt:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS
A0A5A7THV4 Retrotransposon protein5.4e-19100Show/hide
Query:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
        MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Subjt:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
A0A5A7V2R5 Retrotransposon protein6.5e-0469.44Show/hide
Query:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS
        GA  + F DI SNV  +SD VQAEDGLD+EFPTMCS
Subjt:  GARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCS
A0A5D3D9Y6 Retrotransposon protein5.4e-19100Show/hide
Query:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
        MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
Subjt:  MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGCCCGTGCAAAGACTTTTGCTGATATCGAGTCGAATGTGCTAGACAAAAGCGATAGAGTTCAAGCAGAAGATGGGCTGGATATCGAGTTCCCCACTATGTGCAG
CCCAATGACCAGTTTAGGGTCATCGCGAAATGACCGACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGCCCGTGCAAAGACTTTTGCTGATATCGAGTCGAATGTGCTAGACAAAAGCGATAGAGTTCAAGCAGAAGATGGGCTGGATATCGAGTTCCCCACTATGTGCAG
CCCAATGACCAGTTTAGGGTCATCGCGAAATGACCGACGATAG
Protein sequenceShow/hide protein sequence
MGARAKTFADIESNVLDKSDRVQAEDGLDIEFPTMCSPMTSLGSSRNDRR