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IVF0005198 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005198
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:11736190..11736525
RNA-Seq ExpressionIVF0005198
SyntenyIVF0005198
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060795.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.56e-2459.79Show/hide
Query:  GRGSKIGSVARHSYSGWVRVCNSGYRGVVQLCFTGFNDRRSTCDDVAERATSDAADFMAAAGGRTRAGGWNSACGGCRASDWATVWLSVCGGCGASG
        GR SK  S AR    G VRVC+SG  G  QL F GF+DR STCD VAERA  + ADF+A   GRTR  GWNSAC     S WAT+W S CGGC ASG
Subjt:  GRGSKIGSVARHSYSGWVRVCNSGYRGVVQLCFTGFNDRRSTCDDVAERATSDAADFMAAAGGRTRAGGWNSACGGCRASDWATVWLSVCGGCGASG
TrEMBL top hitse value%identityAlignment
A0A5A7V4I8 Ty3-gypsy retrotransposon protein3.2e-1959.79Show/hide
Query:  GRGSKIGSVARHSYSGWVRVCNSGYRGVVQLCFTGFNDRRSTCDDVAERATSDAADFMAAAGGRTRAGGWNSACGGCRASDWATVWLSVCGGCGASG
        GR SK  S AR    G VRVC+SG  G  QL F GF+DR STCD VAERA  + ADF+A   GRTR  GWNSAC G     WAT+W S CGGC ASG
Subjt:  GRGSKIGSVARHSYSGWVRVCNSGYRGVVQLCFTGFNDRRSTCDDVAERATSDAADFMAAAGGRTRAGGWNSACGGCRASDWATVWLSVCGGCGASG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGGGGCGCGGGTCAAAAATTGGGTCGGTGGCGAGGCACAGCTATTCGGGTTGGGTACGGGTGTGCAACTCGGGTTACAGAGGTGTGGTGCAGCTGTGCTTTAC
AGGCTTCAACGATCGGCGCTCGACGTGCGACGACGTGGCTGAGCGAGCGACTAGCGACGCGGCTGATTTCATGGCGGCAGCTGGCGGGAGAACTCGGGCGGGCGGCTGGA
ACTCGGCGTGCGGCGGCTGCAGAGCGAGTGACTGGGCGACGGTCTGGCTCTCGGTGTGTGGCGGCTGCGGCGCGAGTGGCTGGGCGACAATCTGGCGCTCGGCGTGCGGC
GACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGGGGCGCGGGTCAAAAATTGGGTCGGTGGCGAGGCACAGCTATTCGGGTTGGGTACGGGTGTGCAACTCGGGTTACAGAGGTGTGGTGCAGCTGTGCTTTAC
AGGCTTCAACGATCGGCGCTCGACGTGCGACGACGTGGCTGAGCGAGCGACTAGCGACGCGGCTGATTTCATGGCGGCAGCTGGCGGGAGAACTCGGGCGGGCGGCTGGA
ACTCGGCGTGCGGCGGCTGCAGAGCGAGTGACTGGGCGACGGTCTGGCTCTCGGTGTGTGGCGGCTGCGGCGCGAGTGGCTGGGCGACAATCTGGCGCTCGGCGTGCGGC
GACTAG
Protein sequenceShow/hide protein sequence
MEKGRGSKIGSVARHSYSGWVRVCNSGYRGVVQLCFTGFNDRRSTCDDVAERATSDAADFMAAAGGRTRAGGWNSACGGCRASDWATVWLSVCGGCGASGWATIWRSACG
D