CuGenDBv2

Gene ID	IVF0005250
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L34, chloroplastic
Genome location	chr08:1524684..1525910
RNA-Seq Expression	IVF0005250
Synteny	IVF0005250
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0052628.1 50S ribosomal protein L34 [Cucumis melo var. makuwa]

5.46e-78

89.68

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC                LSLGLDWSSKVGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]

1.65e-87

95.48

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]

2.18e-92

100

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]

2.92e-81

90.32

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWV +GA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++ VGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]

1.16e-87

96.13

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVS GA AVRVPSASLVISTG RG CSVSLNTANNTSARSGLLHCSFL SSSLSCSSSFSGLSLGLDWSSK+GVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KI92 Uncharacterized protein

1.2e-67

95.48

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWVS GAIAVRVPSASLV STGSRG CSVSLNT NN SARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGR LVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic

2.2e-71

100

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A5A7UBQ8 50S ribosomal protein L34

3.0e-60

89.68

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHC                LSLGLDWSSKVGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A5D3CSJ7 50S ribosomal protein L34

2.2e-71

100

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic

6.5e-63

90.32

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA
        MAAISVLS+PWV +GA+AVRVPSASLVISTGSR  CSVSLNTANNTSARSGLL CSFLPSSSLSCSSSFSG SLGLDW+S++ VGQGKGRSLVVRAGKAA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTT+GRAVLKRRRAKGRKVLCTKS PSSGK A
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

SwissProt top hits

e value

%identity

Alignment

P82244 50S ribosomal protein L34, chloroplastic

6.6e-36

66.67

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Query:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKA
        MA +S+LS+      AI  R PSASL   TGSR   +    + N  SARSG LHCSFL PSSSL  SS+FSGLSLGLD +S  GV   + R  VVRAGKA
Subjt:  MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFL-PSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKA

Query:  ALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        ALC TKR+RSRKSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Subjt:  ALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Q9LP37 50S ribosomal protein L34, chloroplastic

1.2e-32

64.52

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Query:  AAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRSLVVRAGKAA
        +A S L +P  SNG I   VPSASL + TG R S S     +  +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + R LVVRAGKAA
Subjt:  AAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Arabidopsis top hits

e value

%identity

Alignment

AT1G29070.1 Ribosomal protein L34

8.2e-34

64.52

Show/hide

Query:  AAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRSLVVRAGKAA
        +A S L +P  SNG I   VPSASL + TG R S S     +  +SA S LLHCSFL SS +S +S FSGLS+  D SS+  G+   + R LVVRAGKAA
Subjt:  AAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKV-GVGQGKGRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCAACGGAGCCATTGCCGTCCGCGTTCCTTCAGCTTCTCTTGTAATCTCCACTGGTTCTAGAGGTAGCTGCTC
CGTATCTCTGAATACCGCCAACAACACTTCCGCCCGTTCTGGACTGCTCCATTGTTCATTTCTTCCATCTTCCTCTCTCTCCTGCTCTTCATCTTTTTCAGGTTTATCTT
TGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGGGTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGT
AAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGCGAACCACCAATGGTAGAGCTGTTCTCAAGCGCAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTC
CAACCCTAGCAGTGGAAAGCGTGCTTAA

mRNA sequence

Show/hide mRNA sequence

ATAAGGCTCCTCCTTCATCCTCCGCTAGAAGAATTAGCTGAAAGGGGGAAACACACAGTCTAACAATGGCAGCGATATCAGTATTATCGTCCCCATGGGTTTCCAACGGA
GCCATTGCCGTCCGCGTTCCTTCAGCTTCTCTTGTAATCTCCACTGGTTCTAGAGGTAGCTGCTCCGTATCTCTGAATACCGCCAACAACACTTCCGCCCGTTCTGGACT
GCTCCATTGTTCATTTCTTCCATCTTCCTCTCTCTCCTGCTCTTCATCTTTTTCAGGTTTATCTTTGGGTTTGGATTGGAGCTCTAAGGTTGGGGTCGGACAAGGGAAGG
GTCGGAGCTTAGTGGTTAGGGCTGGCAAGGCTGCACTATGTCAGACTAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGGTTTCGCAGACGAATGCGAACC
ACCAATGGTAGAGCTGTTCTCAAGCGCAGACGTGCCAAGGGTAGGAAGGTCCTCTGCACAAAGTCCAACCCTAGCAGTGGAAAGCGTGCTTAAGTTTTTCTCGCTTTAAC
CATTTGTAGGTTAATTAGGCAATGTTGTCTAATTCTCTCTTCCAATGACTGGTCAAGGTAGCTCTCACTATATTACATGATACTTTGTTATTGATTCATTTGAAAGTTTC
TTAATTGTCAATGTTAAATTCGAATGTCCTGACGGGACAAGCTTATGTGATTGATGCGTTTGTATTGTTCATTTGGAAATCTCCTCTGAACTGAAATATGTACATCTTCC
TGATAATAGAAGGAAAATTAAACTCCCTTCAGGCTTGGTGATTGCTAAGAGGCTGAGAAAACTGAAAAATAGTGAAAGCAACAAAATGGGATA

Protein sequence

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MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSR
KSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

IVF0005250 (gene) of Melon (IVF77) v1 genome