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IVF0005272 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005272
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr03:5012099..5012435
RNA-Seq ExpressionIVF0005272
SyntenyIVF0005272
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035847.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.16e-2958.56Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELT----------------SLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+ +ELFFQ S ST   +QT  V   +D  VLNDDNS SPTQKELT                S  S I DP A ITT KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELT----------------SLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVNDALKDK
        PT VN+AL+++
Subjt:  PTYVNDALKDK

KAA0036710.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.43e-1847.62Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+E+E  FQ S ST    Q    +S ++  V++++NS   +QKE+ S                  SIIGDP+  I T KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVN
        PT V+
Subjt:  PTYVN

KAA0063936.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.94e-1749.55Show/hide
Query:  DNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTSLF------------------SIIGDPNACITTGKKDKIDYAKLIANICYTSSI
        D+E +L  QPS     SV       L+D SV N  NS   TQKE+  +F                  SIIGDP+  ITT KKDKIDYAK+I NICYTSSI
Subjt:  DNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTSLF------------------SIIGDPNACITTGKKDKIDYAKLIANICYTSSI

Query:  EPTYVNDALKD
        EPT VN+ LKD
Subjt:  EPTYVNDALKD

TYK03685.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.43e-1847.62Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+E+E  FQ S ST    Q    +S ++  V++++NS   +QKE+ S                  SIIGDP+  I T KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVN
        PT V+
Subjt:  PTYVN

TYK27718.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.88e-2149.11Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+E+EL FQPS S     Q+      ++  V+++ NS   +QKE+ S                  S IGDP+A ITT KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVNDALKDKF
        PT +N+A KD F
Subjt:  PTYVNDALKDKF

TrEMBL top hitse value%identityAlignment
A0A5A7T028 Putative mitochondrial protein5.0e-1347.62Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+E+E  FQ S ST    Q    +S ++  V++++NS   +QKE+ S                  SIIGDP+  I T KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVN
        PT V+
Subjt:  PTYVN

A0A5A7VBX5 Putative mitochondrial protein1.5e-1249.54Show/hide
Query:  DNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELT----------------SLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIEP
        D+E +L  QPS     SV       L+D SV N  NS   TQKE+                    SIIGDP+  ITT KKDKIDYAK+I NICYTSSIEP
Subjt:  DNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELT----------------SLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIEP

Query:  TYVNDALKD
        T VN+ LKD
Subjt:  TYVNDALKD

A0A5D3BX65 Putative mitochondrial protein5.0e-1347.62Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+E+E  FQ S ST    Q    +S ++  V++++NS   +QKE+ S                  SIIGDP+  I T KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVN
        PT V+
Subjt:  PTYVN

A0A5D3DW56 Putative mitochondrial protein7.5e-1749.11Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+E+EL FQPS S     Q+      ++  V+++ NS   +QKE+ S                  S IGDP+A ITT KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTS----------------LFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVNDALKDKF
        PT +N+A KD F
Subjt:  PTYVNDALKDKF

A0A5D3E335 Putative mitochondrial protein5.0e-2158.56Show/hide
Query:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELT----------------SLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE
        MD+ +ELFFQ S ST   +QT  V   +D  VLNDDNS SPTQKELT                S  S I DP A ITT KKDKIDYAKLIANICYTSSIE
Subjt:  MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELT----------------SLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIE

Query:  PTYVNDALKDK
        PT VN+AL+++
Subjt:  PTYVNDALKDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAACGAACAAGAATTATTTTTTCAACCATCAAGCAGCACTACTTCTTCAGTACAAACTAATGTGGTTGCTTCTTTAATTGATATTAGTGTTTTGAACGATGATAA
CAGCTTAAGTCCCACTCAAAAGGAATTAACTTCTCTATTCTCCATTATTGGTGATCCAAATGCATGTATCACTACTGGAAAGAAGGATAAGATAGATTATGCAAAATTAA
TTGCTAATATTTGTTACACATCTTCCATTGAGCCTACATATGTAAATGATGCTCTCAAAGACAAATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAACGAACAAGAATTATTTTTTCAACCATCAAGCAGCACTACTTCTTCAGTACAAACTAATGTGGTTGCTTCTTTAATTGATATTAGTGTTTTGAACGATGATAA
CAGCTTAAGTCCCACTCAAAAGGAATTAACTTCTCTATTCTCCATTATTGGTGATCCAAATGCATGTATCACTACTGGAAAGAAGGATAAGATAGATTATGCAAAATTAA
TTGCTAATATTTGTTACACATCTTCCATTGAGCCTACATATGTAAATGATGCTCTCAAAGACAAATTCTAG
Protein sequenceShow/hide protein sequence
MDNEQELFFQPSSSTTSSVQTNVVASLIDISVLNDDNSLSPTQKELTSLFSIIGDPNACITTGKKDKIDYAKLIANICYTSSIEPTYVNDALKDKF