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IVF0005289 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005289
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 28 isoform X2
Genome locationchr03:2285616..2286077
RNA-Seq ExpressionIVF0005289
SyntenyIVF0005289
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025401.1 protein transport protein SEC31-like protein B [Cucumis melo var. makuwa]1.90e-1148.48Show/hide
Query:  TQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQP------CKNLATTVPSSQSCPAFATNCAQT
        TQF    S   QSC +LAT+ P    +    PI PR  DH TQF IV N   Q C +LT TVPSS+  P       +   TTVPSSQSCP  A N AQT
Subjt:  TQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQP------CKNLATTVPSSQSCPAFATNCAQT

KAA0041464.1 hypothetical protein E6C27_scaffold6G00410 [Cucumis melo var. makuwa]9.14e-95100Show/hide
Query:  MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCA
        MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCA
Subjt:  MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCA

Query:  QTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
        QTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
Subjt:  QTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER

KAA0041501.1 DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa]9.84e-3155.07Show/hide
Query:  QSCLELATSDP---------------------VLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNC
        QSCLELAT+ P                     +LN+AQ  PPI P+  DHRT+F           P++   VP        NL TTVPSSQSCP FATNC
Subjt:  QSCLELATSDP---------------------VLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNC

Query:  AQTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
        AQTSRP YPVLNRAQSS  IMPSPCRHP ISNFEDHER
Subjt:  AQTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER

TYK09772.1 DEAD-box ATP-dependent RNA helicase 28 isoform X2 [Cucumis melo var. makuwa]2.02e-0836.03Show/hide
Query:  VPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQ
        +PRP +H TQFSIV S R QSC                    P L DHRTQF IV + R QSCP+L +                            +C Q
Subjt:  VPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQ

Query:  TSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
                        SI+PSP RH RISN EDHER
Subjt:  TSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER

TrEMBL top hitse value%identityAlignment
A0A5A7SMD2 Protein transport protein SEC31-like protein B1.8e-0946.67Show/hide
Query:  TQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQP------CKNLATTVPSSQSCPAFATNCAQTS
        TQF    S   QSC +LAT+ P    +    PI PR  DH TQF IV N   Q C +LT TVPSS+  P       +   TTVPSSQSCP  A N AQT 
Subjt:  TQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQP------CKNLATTVPSSQSCPAFATNCAQTS

Query:  RPPYP
            P
Subjt:  RPPYP

A0A5A7TIN1 DEAD-box ATP-dependent RNA helicase 28 isoform X21.2e-2454.35Show/hide
Query:  QSCLELATS---------------------DPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNC
        QSCLELAT+                      P+LN+AQ  PPI P+  DHRT+F               + VP        NL TTVPSSQSCP FATNC
Subjt:  QSCLELATS---------------------DPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNC

Query:  AQTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
        AQTSRP YPVLNRAQSS  IMPSPCRHP ISNFEDHER
Subjt:  AQTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER

A0A5D3CEQ8 DEAD-box ATP-dependent RNA helicase 28 isoform X21.1e-0636.03Show/hide
Query:  VPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQ
        +PRP +H TQFSIV S R QSC                    P L DHRTQF IV + R QSCP+L +                            +C Q
Subjt:  VPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQ

Query:  TSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
                        SI+PSP RH RISN EDHER
Subjt:  TSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER

A0A5D3DM22 Uncharacterized protein3.1e-73100Show/hide
Query:  MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCA
        MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCA
Subjt:  MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCA

Query:  QTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
        QTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER
Subjt:  QTSRPPYPVLNRAQSSLSIMPSPCRHPRISNFEDHER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCAAGACCTTGCAACCACCATACCCAGTTCTCAATCGTTGCCAGTATTCGCAGCCAATCGTGCCTAGAGCTTGCGACCTCCGACCCAGTTCTCAATCAGGCCCA
GCCCTTGCCACCAATCGAGCCCAGACTTTACGACCACCGTACCCAGTTCCCAATCGTGCTCAATTCTCGCTACCAATCGTGCCCAAACCTTACGAACACCGTACCCAGTT
CTCGCCGTCAACCGTGCAAAAACCTCGCGACCACCGTACCCAGTTCTCAATCCTGCCCAGCCTTCGCCACCAATTGTGCCCAGACCTCACGACCACCGTACCCAGTTCTC
AATCGTGCCCAGTCCTCGCTGTCAATCATGCCCAGTCCTTGTCGCCACCCACGAATCTCCAACTTTGAAGATCATGAGCGGTATTATTCCTCTTCGACCAACGACGTTCA
ATGTGGTTTTCATCCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCAAGACCTTGCAACCACCATACCCAGTTCTCAATCGTTGCCAGTATTCGCAGCCAATCGTGCCTAGAGCTTGCGACCTCCGACCCAGTTCTCAATCAGGCCCA
GCCCTTGCCACCAATCGAGCCCAGACTTTACGACCACCGTACCCAGTTCCCAATCGTGCTCAATTCTCGCTACCAATCGTGCCCAAACCTTACGAACACCGTACCCAGTT
CTCGCCGTCAACCGTGCAAAAACCTCGCGACCACCGTACCCAGTTCTCAATCCTGCCCAGCCTTCGCCACCAATTGTGCCCAGACCTCACGACCACCGTACCCAGTTCTC
AATCGTGCCCAGTCCTCGCTGTCAATCATGCCCAGTCCTTGTCGCCACCCACGAATCTCCAACTTTGAAGATCATGAGCGGTATTATTCCTCTTCGACCAACGACGTTCA
ATGTGGTTTTCATCCCTTTTGA
Protein sequenceShow/hide protein sequence
MVPRPCNHHTQFSIVASIRSQSCLELATSDPVLNQAQPLPPIEPRLYDHRTQFPIVLNSRYQSCPNLTNTVPSSRRQPCKNLATTVPSSQSCPAFATNCAQTSRPPYPVL
NRAQSSLSIMPSPCRHPRISNFEDHERYYSSSTNDVQCGFHPF