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IVF0005346 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005346
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60S ribosomal protein L13
Genome locationchr10:15732680..15732844
RNA-Seq ExpressionIVF0005346
SyntenyIVF0005346
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001380 - Ribosomal protein L13e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9133924.1 hypothetical protein Leryth_004642 [Lithospermum erythrorhizon]3.35e-1872.22Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PIGLEKP+VELVK+TEDMKSF+AYHKL +E+ NARHVG + K+ AEAEK +KK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

MBA0553449.1 hypothetical protein [Gossypium lobatum]3.45e-1875.93Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI  EKPSVELVKVTE+MKSFKAY+KL VE+ NARH+GA++KK AEAEK +KK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

XP_004143667.1 60S ribosomal protein L13-3 [Cucumis sativus]3.44e-2085.19Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPIGLEKPSVELVK+TEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

XP_008467320.1 PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]2.44e-2087.04Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPIGLEKPSVELVKVTEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

XP_038907267.1 60S ribosomal protein L13-3-like [Benincasa hispida]2.71e-1983.33Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPIGLEKPSVELVKVTEDMK+FKAY KL VE+ NARHVGA++KK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

TrEMBL top hitse value%identityAlignment
A0A0A0KKX2 60S ribosomal protein L136.7e-1585.19Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPIGLEKPSVELVK+TEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

A0A1S3CTG8 60S ribosomal protein L135.1e-1587.04Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPIGLEKPSVELVKVTEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

A0A5A7UNR2 60S ribosomal protein L136.7e-1585.19Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPIGLEKPSVELVK+TEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

A0A5J5BBP7 60S ribosomal protein L134.8e-1381.48Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI LEKPSVELVKVT++MKSFKAY KL VE+AN RHVGA+MKK AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

A0A5N5JRQ2 60S ribosomal protein L134.8e-1379.63Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI LEKPSVELVKVTE+MKSFKAY KL VE+ NARHVGA++K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

SwissProt top hitse value%identityAlignment
P41127 60S ribosomal protein L13-13.7e-1059.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

P41129 60S ribosomal protein L13-22.6e-0855.56Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI  EK ++ELVK+T +MKS  AY K+ +E+ N RH GA+ K+ A+AEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

P49627 60S ribosomal protein L131.2e-0861.11Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI  EK  + L KV + MKSF AY KL VE+ N RH+GA+MK+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

Q9FF90 60S ribosomal protein L13-38.2e-1059.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI   K ++ELVK+T D+K+FKAY K+ +E+ NARH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

Q9SMT4 Putative 60S ribosomal protein L13-21.5e-0857.41Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        MPI  E P++ELVK+T DMK F AY K+ +E  N RH G + K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

Arabidopsis top hitse value%identityAlignment
AT3G49010.1 breast basic conserved 12.6e-1159.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

AT3G49010.2 breast basic conserved 12.6e-1159.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

AT3G49010.3 breast basic conserved 12.6e-1159.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

AT3G49010.4 breast basic conserved 12.6e-1159.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

AT3G49010.5 breast basic conserved 12.6e-1159.26Show/hide
Query:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK
        +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Subjt:  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGGTCACAGAAGACATGAAGTCTTTCAAGGCTTATCACAAGCTTCATGTTGAACAAGCAAATGCCCGTCA
TGTTGGTGCTCAGATGAAGAAGGTTGCTGAGGCAGAAAAGGGAGAGAAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGGTCACAGAAGACATGAAGTCTTTCAAGGCTTATCACAAGCTTCATGTTGAACAAGCAAATGCCCGTCA
TGTTGGTGCTCAGATGAAGAAGGTTGCTGAGGCAGAAAAGGGAGAGAAGAAGTAA
Protein sequenceShow/hide protein sequence
MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK