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IVF0005375 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005375
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranscription factor TCP10-like
Genome locationchr12:20868664..20869436
RNA-Seq ExpressionIVF0005375
SyntenyIVF0005375
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]6.82e-3082.19Show/hide
Query:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTED
        RRL SSAG+G  KVYTSKG RAR+LRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAK AID LSRPL+TED
Subjt:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTED

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]6.20e-115100Show/hide
Query:  MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS
        MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS
Subjt:  MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS

Query:  LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
Subjt:  LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]1.18e-9685.63Show/hide
Query:  MGSLDDHDKKKAKIGRRNRRLCSSA--GAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQI
        MGSL DHDK   KI RRNRRL S+A  GAG GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ 
Subjt:  MGSLDDHDKKKAKIGRRNRRLCSSA--GAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQI

Query:  FSLPVPSSSSSS-------QFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        FSLPVPSSSSSS       QFQSYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Subjt:  FSLPVPSSSSSS-------QFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]1.37e-6474.15Show/hide
Query:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSSSSSQFQSYPLQ
        RRL SSAG+G  KVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAK AIDALSRPL+TED        +  VPSSSSSSQF +YPL+
Subjt:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSSSSSQFQSYPLQ

Query:  NFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        NF + GNLSV SPMI+NVT A FSG QPPC SQSN  +G P FPMWE
Subjt:  NFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]2.50e-7675.46Show/hide
Query:  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP
        SL+D D+K AK+GRR+RRL SSAGA  GKVYTS+GLRARR RLSAPTAI+FYD+QDRLG  RPTE +DWLL+NAK AIDALSRPL+T D + RKQIF  P
Subjt:  SLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP

Query:  VPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        VPSSSSS QFQSYPL+NFSQKGNL+VFSPMILN T   FSG QPP PSQSNV  GF  FP+WE
Subjt:  VPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein7.9e-7585.63Show/hide
Query:  MGSLDDHDKKKAKIGRRNRRLCSS--AGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQI
        MGSL DHDK   KI RRNRRL S+  AGAG GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLL NAK AIDALSRPLQTEDNDCRKQ 
Subjt:  MGSLDDHDKKKAKIGRRNRRLCSS--AGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQI

Query:  FSLPVP-------SSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        FSLPVP       SSSSSSQFQSYPLQNFSQKGNLSVF PMILN TT  FSGTQPPCPSQSN+GAGFPFFPMWE
Subjt:  FSLPVP-------SSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

A0A199UI32 Transcription factor PCF52.1e-1439.61Show/hide
Query:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPV--------PSSSSSS
        RR  ++AG G GKV T++GLR RR+RLSA TAI+FYD+QDRLG  RP++A+DWLL+ A+PAID LS                 P+        P++++S 
Subjt:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPV--------PSSSSSS

Query:  QFQSYPLQNFSQKGNLSVFSPMILNVTTAGF-----SGTQPPCPSQSNVGAGFP
         F    LQ      + S+ +  I +   A F     + T PPC S SN+   +P
Subjt:  QFQSYPLQNFSQKGNLSVFSPMILNVTTAGF-----SGTQPPCPSQSNVGAGFP

A0A1S3B7T4 transcription factor TCP10-like1.3e-88100Show/hide
Query:  MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS
        MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS
Subjt:  MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS

Query:  LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
Subjt:  LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

A0A5A7UTZ9 Transcription factor TCP10-like1.3e-88100Show/hide
Query:  MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS
        MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS
Subjt:  MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFS

Query:  LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
Subjt:  LPVPSSSSSSQFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

A0A6J1KM30 transcription factor PCF8-like5.2e-5074.15Show/hide
Query:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSSSSSQFQSYPLQ
        RRL SS  AG+GKVYTSKGLRARRLRLSAPTAI+FYD+QDRLG  RPTEAIDWLLQNAK AIDALSRPL+TED        +  VPSSSSSSQF +YPL+
Subjt:  RRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSSSSSQFQSYPLQ

Query:  NFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE
        NF + GNLSV SPMI+NVT A FSG QPPC SQSN  +G P FPMWE
Subjt:  NFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE

SwissProt top hitse value%identityAlignment
A2XMN1 Transcription factor PCF61.7e-1366.04Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDAL
        KVYT+KG+R RR+RLS  TAI+FYDLQDRLG  +P++AI+WL+  A PAID L
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDAL

A2ZMR9 Transcription factor PCF81.3e-1348.94Show/hide
Query:  RNRRLCSSAGAGA---GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSS
        R  R+  +A  G     KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL++ A  AIDAL         DC    F+LP  +SS
Subjt:  RNRRLCSSAGAGA---GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSS

Q10CE8 Transcription factor PCF61.7e-1366.04Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDAL
        KVYT+KG+R RR+RLS  TAI+FYDLQDRLG  +P++AI+WL+  A PAID L
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDAL

Q2QM59 Transcription factor PCF81.3e-1348.94Show/hide
Query:  RNRRLCSSAGAGA---GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSS
        R  R+  +A  G     KV TS+GLR RR+RLS PTAI FYD+QDRLG  +P++AI+WL++ A  AIDAL         DC    F+LP  +SS
Subjt:  RNRRLCSSAGAGA---GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSS

Q9MAH8 Transcription factor TCP31.3e-1365.45Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSR
        KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AK AID L++
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSR

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 39.1e-1565.45Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSR
        KV T+KG R RR+RLSAPTAI+FYD+QDRLG  RP++A+DWL+  AK AID L++
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSR

AT2G31070.1 TCP domain protein 103.5e-1441.18Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP-----VPSSSSSSQFQSYPLQNFSQKGN
        KV+TSKG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK AID L     T     ++ + + P     V    ++ Q Q +   N   +  
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLP-----VPSSSSSSQFQSYPLQNFSQKGN

Query:  LSVFSPMILNVTTAGFSGT
        +  F P     TT G  GT
Subjt:  LSVFSPMILNVTTAGFSGT

AT3G15030.1 TCP family transcription factor 41.7e-1362.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK +ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALS

AT3G15030.2 TCP family transcription factor 41.7e-1362.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK +ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALS

AT3G15030.3 TCP family transcription factor 41.7e-1362.96Show/hide
Query:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALS
        KV T+KG R RR+RLSA TAI+FYD+QDRLG  RP++A+DWL++ AK +ID L+
Subjt:  KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTTGATGATCACGATAAGAAAAAGGCGAAGATTGGCAGGAGAAATCGTCGACTCTGTTCTAGTGCCGGTGCTGGTGCCGGCAAGGTTTATACTTCAAAAGG
ACTCCGAGCTAGGCGGCTTCGGCTGTCGGCTCCGACCGCCATTAAATTTTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATCGATTGGCTTCTTC
AGAATGCGAAACCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGCAGAAAACAGATTTTCAGTTTACCTGTTCCTTCATCTTCTTCTTCTTCG
CAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAGGGCAACCTCTCTGTTTTCAGTCCAATGATTTTGAATGTCACGACGGCGGGATTTTCCGGCACCCAACCACC
GTGTCCAAGTCAGAGCAATGTCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTTGATGATCACGATAAGAAAAAGGCGAAGATTGGCAGGAGAAATCGTCGACTCTGTTCTAGTGCCGGTGCTGGTGCCGGCAAGGTTTATACTTCAAAAGG
ACTCCGAGCTAGGCGGCTTCGGCTGTCGGCTCCGACCGCCATTAAATTTTACGATCTTCAAGATCGCCTTGGATGTGGCCGACCAACTGAAGCCATCGATTGGCTTCTTC
AGAATGCGAAACCCGCCATTGATGCCCTCTCTCGACCTTTACAAACAGAGGACAACGATTGCAGAAAACAGATTTTCAGTTTACCTGTTCCTTCATCTTCTTCTTCTTCG
CAGTTCCAGTCTTACCCACTTCAAAATTTCTCCCAAAAGGGCAACCTCTCTGTTTTCAGTCCAATGATTTTGAATGTCACGACGGCGGGATTTTCCGGCACCCAACCACC
GTGTCCAAGTCAGAGCAATGTCGGAGCTGGTTTTCCTTTCTTTCCGATGTGGGAATAGCAGCCGCCAACCGGCCGTGATTTTTGAAGGTGAATTTCGCATTTGCTTTCAA
ACGTTTTATTTTTTACCATTTCCCTTTGATTTGTATTTTTAAAACTCTAAATAGTATAAATTTAAAGTATAAAGTAGTGTAAATGTATGGGTTTTATATCCTTCATTTGT
TAACTTTGTAAAATA
Protein sequenceShow/hide protein sequence
MGSLDDHDKKKAKIGRRNRRLCSSAGAGAGKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCRKQIFSLPVPSSSSSS
QFQSYPLQNFSQKGNLSVFSPMILNVTTAGFSGTQPPCPSQSNVGAGFPFFPMWE