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IVF0005413 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0005413
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:8655054..8655428
RNA-Seq ExpressionIVF0005413
SyntenyIVF0005413
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2726386.1 hypothetical protein I3760_01G109800 [Carya illinoinensis]1.94e-3557.8Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M  ++F+Q AIPHFDGHYDHWSML+                V EP  G +L D QK+EL+ LKLKD+KAKNYLFQAID + L+TILCK+T+K IWDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRRQS
          +GT R S
Subjt:  SIKGTRRQS

PKA63642.1 hypothetical protein AXF42_Ash005537 [Apostasia shenzhenica]2.62e-3762.62Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M +++FVQ AIP FDGHYDHWSMLI                V EPA G +L D QK+ELK LKLKDLKAKNYLFQAIDR+ LETILCK+T+K IWDSMK 
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +GT R
Subjt:  SIKGTRR

XP_021623171.1 uncharacterized protein LOC110622816 [Manihot esculenta]1.08e-3361.32Show/hide
Query:  TTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKS
        T  NFVQ AIP F+GHYDHWSMLI                +  PA G  L D QK+E++A KLKDLKAKNYLFQAI+R+ LETILCKETSK IWDSMKK 
Subjt:  TTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKS

Query:  IKGTRR
         +GT R
Subjt:  IKGTRR

XP_027152457.1 uncharacterized protein LOC113752541 [Coffea eugenioides]5.91e-3461.68Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M  DNFVQ AIP FDGHYDHWSML+                V EP +G IL + QK EL+ALKLKDLKAKNYLFQAIDR  LETIL K+TSKQ+WDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +G  +
Subjt:  SIKGTRR

XP_034707079.1 uncharacterized protein LOC117930546 [Vitis riparia]5.80e-3562.62Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M +D FVQ AIP FDGHYDHWSML+                V EPA G +L D QK EL+ALKLKDLKAKNY FQAIDR+ LETILCK+T+K IWDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +GT R
Subjt:  SIKGTRR

TrEMBL top hitse value%identityAlignment
A0A1U7YQG9 uncharacterized protein LOC1045867021.3e-2559.81Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M TDNFVQ AIP FDGHYDHWSML+                + EPA G  + D QK+EL+   LKDLKAKNYLFQAIDR+ LETI CK+TSK IWDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +G+ R
Subjt:  SIKGTRR

A0A2I0B786 Uncharacterized protein6.2e-2862.62Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M +++FVQ AIP FDGHYDHWSMLI                V EPA G +L D QK+ELK LKLKDLKAKNYLFQAIDR+ LETILCK+T+K IWDSMK 
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +GT R
Subjt:  SIKGTRR

A0A438DX68 Uncharacterized protein2.9e-2552.14Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M ++NFVQ AIP FDGHYDHWSML+                + EPA  + + D QK+E++  +LKDLKAKNYLFQAIDR+ LETILCK+TS++IWDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRRQSGCNFKVFE
          +G+ R      + F+
Subjt:  SIKGTRRQSGCNFKVFE

A0A5C7ICJ8 Reverse transcriptase Ty1/copia-type domain-containing protein1.7e-2559.81Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M ++N+VQ +IP FDGHYDHWSML+                V EPA   +L  TQK+EL+ALKLKDLKAKNYLFQAIDR+ LETIL KE+SK+IWDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +G+ R
Subjt:  SIKGTRR

A0A6A6K386 Uncharacterized protein1.7e-2559.81Show/hide
Query:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK
        M + NF+Q +IP FDGHYDHWSML+                  EPA G  L D QK+EL A KLKDLKAKNYLFQAID + LETILCK+TSKQIWDSMKK
Subjt:  MTTDNFVQLAIPHFDGHYDHWSMLI----------------VTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKK

Query:  SIKGTRR
          +G  R
Subjt:  SIKGTRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTGATAACTTTGTCCAACTAGCAATTCCTCACTTTGATGGTCATTATGACCATTGGAGCATGCTAATAGTAACAGAGCCTGCACTTGGAGCAATATTGTTTGA
TACACAAAAGTCAGAATTGAAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTCTTCCAAGCAATTGATCGAGCAACTTTGGAAACAATTCTTTGCAAAGAAA
CCTCCAAACAGATTTGGGACTCTATGAAAAAAAGCATCAAAGGAACGCGAAGGCAGAGCGGGTGTAACTTTAAGGTCTTCGAACCGAATTCGAGACTCTACGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTGATAACTTTGTCCAACTAGCAATTCCTCACTTTGATGGTCATTATGACCATTGGAGCATGCTAATAGTAACAGAGCCTGCACTTGGAGCAATATTGTTTGA
TACACAAAAGTCAGAATTGAAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTCTTCCAAGCAATTGATCGAGCAACTTTGGAAACAATTCTTTGCAAAGAAA
CCTCCAAACAGATTTGGGACTCTATGAAAAAAAGCATCAAAGGAACGCGAAGGCAGAGCGGGTGTAACTTTAAGGTCTTCGAACCGAATTCGAGACTCTACGAATGA
Protein sequenceShow/hide protein sequence
MTTDNFVQLAIPHFDGHYDHWSMLIVTEPALGAILFDTQKSELKALKLKDLKAKNYLFQAIDRATLETILCKETSKQIWDSMKKSIKGTRRQSGCNFKVFEPNSRLYE